Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992268.1:2177157-2181785[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.17 15 6.8 0.7 1 21 64 84 64 85 0.96

2 27 0.007 0.62 11.1 0.6 2 23 157 178 156 178 0.97

3 27 0.017 1.5 9.9 0.1 1 23 182 204 182 204 0.95

4 27 1.4 1.3e+02 3.9 0.7 1 15 209 223 209 232 0.78

5 27 0.011 0.99 10.5 0.6 1 23 238 261 238 261 0.97

6 27 0.002 0.17 12.9 1.2 1 23 268 291 268 291 0.98

7 27 0.00033 0.029 15.3 0.7 1 23 298 320 298 320 0.97

8 27 0.0014 0.12 13.4 0.3 1 23 394 417 394 417 0.96

9 27 2.1 1.8e+02 3.4 1.8 3 23 445 466 443 466 0.92

10 27 0.00014 0.012 16.5 0.5 1 23 514 536 514 536 0.97

11 27 0.00063 0.056 14.4 0.4 1 21 570 590 570 593 0.90

12 27 0.0036 0.32 12.1 1.1 1 21 600 620 600 621 0.95

13 27 0.38 33 5.7 0.4 1 23 665 687 665 687 0.92

14 27 0.61 54 5.0 1.3 2 23 712 734 711 734 0.96

15 27 0.0032 0.28 12.2 2.8 1 23 756 778 756 778 0.98

16 27 0.025 2.2 9.4 4.6 1 21 782 802 782 804 0.95

17 27 0.12 11 7.3 0.2 3 23 811 832 809 832 0.91

18 27 0.071 6.3 8.0 2.7 1 23 873 895 873 895 0.94

19 27 0.24 21 6.3 0.3 2 23 919 941 918 941 0.95

20 27 0.0059 0.52 11.4 3.3 3 23 965 985 964 985 0.98

21 27 0.0017 0.15 13.0 3.4 3 23 991 1011 990 1011 0.97

22 27 0.0059 0.52 11.4 2.3 1 23 1018 1041 1018 1041 0.97

23 27 6.3e-05 0.0056 17.6 2.4 1 23 1047 1070 1047 1070 0.97

24 27 0.012 1 10.4 0.7 1 23 1076 1099 1076 1099 0.97

25 27 0.00038 0.033 15.1 0.5 1 23 1105 1127 1105 1127 0.97

26 27 8e-07 7e-05 23.6 1.0 1 23 1133 1155 1133 1155 0.99

27 27 0.00015 0.013 16.4 5.1 1 23 1161 1183 1161 1184 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.17	15	6.8	0.7	1	21	64	84	64	85	0.96
2	27	0.007	0.62	11.1	0.6	2	23	157	178	156	178	0.97
3	27	0.017	1.5	9.9	0.1	1	23	182	204	182	204	0.95
4	27	1.4	1.3e+02	3.9	0.7	1	15	209	223	209	232	0.78
5	27	0.011	0.99	10.5	0.6	1	23	238	261	238	261	0.97
6	27	0.002	0.17	12.9	1.2	1	23	268	291	268	291	0.98
7	27	0.00033	0.029	15.3	0.7	1	23	298	320	298	320	0.97
8	27	0.0014	0.12	13.4	0.3	1	23	394	417	394	417	0.96
9	27	2.1	1.8e+02	3.4	1.8	3	23	445	466	443	466	0.92
10	27	0.00014	0.012	16.5	0.5	1	23	514	536	514	536	0.97
11	27	0.00063	0.056	14.4	0.4	1	21	570	590	570	593	0.90
12	27	0.0036	0.32	12.1	1.1	1	21	600	620	600	621	0.95
13	27	0.38	33	5.7	0.4	1	23	665	687	665	687	0.92
14	27	0.61	54	5.0	1.3	2	23	712	734	711	734	0.96
15	27	0.0032	0.28	12.2	2.8	1	23	756	778	756	778	0.98
16	27	0.025	2.2	9.4	4.6	1	21	782	802	782	804	0.95
17	27	0.12	11	7.3	0.2	3	23	811	832	809	832	0.91
18	27	0.071	6.3	8.0	2.7	1	23	873	895	873	895	0.94
19	27	0.24	21	6.3	0.3	2	23	919	941	918	941	0.95
20	27	0.0059	0.52	11.4	3.3	3	23	965	985	964	985	0.98
21	27	0.0017	0.15	13.0	3.4	3	23	991	1011	990	1011	0.97
22	27	0.0059	0.52	11.4	2.3	1	23	1018	1041	1018	1041	0.97
23	27	6.3e-05	0.0056	17.6	2.4	1	23	1047	1070	1047	1070	0.97
24	27	0.012	1	10.4	0.7	1	23	1076	1099	1076	1099	0.97
25	27	0.00038	0.033	15.1	0.5	1	23	1105	1127	1105	1127	0.97
26	27	8e-07	7e-05	23.6	1.0	1	23	1133	1155	1133	1155	0.99
27	27	0.00015	0.013	16.4	5.1	1	23	1161	1183	1161	1184	0.96

Sequence Information

Coding Sequence: ATGGGAAATGAGGCCGCTTTAAAACTTGGGTCGTCTGAAAATTTAAATGTAGAAGATCCATTGAAAGTTACAGAAAAGAAACGTTATCAACGAAGCGCAAGAGCAGAGGCTAGGCTGGCCACTAAGAAAAATGCGAGCGCTATTCTAGAATGTTGGAATCTTTGTCCATTTAGGTGGAAAAGAAATCGTTTTAAATGCGCCTATTGTGAGGATAATTTTATCGAATGTACAGAATTGAGAAGCCACATAAGACTTTGTTCAACTCAACACTGCATTAAAGATATATATAGTAAATTCAAGGAAATGTCGCTTATAAATATTGATGTGACTGATGCTATCTGTAGGATATGCGCCATGCCTTTTCAAGGGATTAACGAAATGCGTAATCATGTAATTGAACACGGTTTCGTCTTCGATACGTCTCACCCGGATGGCGTTCTACCATTCTTCTTGGACAAGGAGTCATGGAAATGTTTGATTTGTCGAGAATCCTTTAATAATTTCCTAAAGCTTTATGAGCATATGAATATCCATTATCAACATTATATTTGTGCTACATGCGGTAAAGGGTATATGACGGCACCTCGTTTGCGAAAGCATTCAGAGGTTCATATAACTGGTACGTTTCCATGTGATAAATGTAGGCAAGTTTTTACGATGCGTGCTGCCCGTGATTATCATAAAGCTCACGCCCATGCCAAAGGACCGCGCTATGAATGTCCACAATGCAATATGAGATTTGAGGGTTATTATGAAAGAATGAATCATTTAAATAAAGAGCATAGGGAAAAGGAAGTTTTGTATAAATGTGCCCATTGCGAGTTATCTTTCAAAACGAGTGGGAAAAGGGCTATACACGTGAGATCAGTCCATTTTCCTCAACAGCGAAACTTTGCCTGTCCCTTCTGTAAATGGTTATTTAAAACTGGCTATGAATTAAAAAGGCATATGGTTAAACATACGGGTCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGACGACGACGGCGAGCAAACAACGAATTGGCGGAGGAATCCGAGAAAAGAATAGCAAAAACAATGATGCGTAGAAACGCACTGACGATTCTTGAATGTTCCACTGCTTGGGCCTTCCGTTGGTTCCAAAGCGCGTATTATTGCTCGTACTGTGATGTTAAGTTCGTAGATCCATTACTTTTACGCGATCACGTTAGCTCTTTTCACATTGCCGATGCACCTACAAAGCGAATATTTTCAAAACTTACTGAAAATAACATGGTTAAGGTAGACGTATCTAATGTACATTGTAGGATTTGCAATTGTAATATAGAAAGCATAGATTATTTGAAAAAACACCTAATGGACGTTCATGATAAAACCCTAAATCGAGATTATAACGATGGAATACTGCCCTTTAAACTCGATTCGAACGGTTTCGAATGCCAAATATGTTGCGCGCATTTTACAAGTTTTTGTAAAATCAATGAACACATGAACACACACTTCAAAAACTATATTTGCGATGCATGCGGTAAGGCGTTTGTATCCAAATCACGGTTTAGAACGCATGTACAATCACATGAGACCGGTAGTTTTCCTTGTGGGGTATGTGATGAAATTTTAGAAACGAGGGTCGCTAGAATGTGTCATAGGTCGAAAGTTCACAAGAAAGGAGTTCGATACACATGTCCACATTGCCCCGAAGTTTTTACAACTTACTACGCAAGAGCGAAGCATTTGGTAGACGGACACAATCAACAGAAGCAAAAATACGAATGCTTTACGTGCGGTAAATCTTTCGAAACGAGCTGTAAACGCGCAGCGCACATTCGCGATGGAGTCGCAAGGGAAATAACAGTTAAAATTGAATGGAAAAAAGCACGAAGAGCTACGGAAGATAAAGCAAATGCCGCCTTGCTGCTTGAATGTTCAAATGCAGTGGCGTTTAGGTGGATGCGTGGCAAATTTATGTGTGCATACTGCCCTAAAATATGCGCAAATGTTAATGAAATACGTTCTCATAGCCAAGCGCACGATAAACTTCTTATTTTTCATAAACCAGAAGTTCGGAATTCATTTCCACTTAGAATTGATATAACAAATTTAAAATGCAGCCTATGCGTCTTCAATTGTATAAGCTTAATTGATTTAAAAACGCACCTGACAACGGATCATGAAAAAAGTTTCAACTCAAAATATAGCGATGGTGTAATTCCATTCGTTTTGACTAGCTCCGAATATCGCTGTGTTCATTGCAACACATTGTTTGAAAGCTATATGAACTTATTTAGCCACATGAATGAACATTATCAGAGTTTTGTTTGTTATACGTGCGGAAAAGGATACTCGGCCAAGCACAAGTTAAGAGCTCACCAGAAGTGTCACGAAACTGGGAATATTGCTTGTCCTAAATGCGACCTTGTATTTGTAAATCACGTTGTCAAAAATAGACATGTCGCTATGACTCACGGGACGATCAAGACTGTTAATTGGAAACGGAGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATAGAATACTCTAATGCCTGTCCTTTTCGATGGAAACGCGGCGCTTTCGCTTGTTCGCACTGCCCGAGGACTTTCGGTCATTTTCAGGATGTTTTCAATCATGCTCAGGAACATAGTAATCGTCTTGAAGCTATGAGATACGCACGGCCGTACGATAATGTTAAGATAGAAATAAGTAATCTTAAATGTGTTATTTGTCACAATAGTATGAACGACTTGGAACAGCTTAAAGAGCATTTGCTGATCGTTCATCAAAAGCCGATACATAAAGAATTGAGCTTGGGTGTGACACCATTCATTCTTCAGAATAAAGAAATGCTCTGTACGCATTGCGATGAACGTTTCTCTTTGTTTTCTAGATTGAATAGTCACATGAATCAACACTATCCAAATAATATTTGCTTTCACTGTGGGAAATCATTCTCAGCCGTTCATCGGTTGAAAGCTCATCAGTTAACTCACGAATCTAACGAAATGGAACACAAATGTTCCAAATGCGACGAAATATTCGATACTCGAGCGTTGAAAAACTATCACATAAACACAACACACGCGCCGGAAAATCGCTACCGATGCCCGTATTGTAACTTATCGTTCAAACGTTATTCAGATCGTTTGAGACATTTGAAACAGCTTCATAACCAAAGCGTTGAATATCCATGTCATTTGTGTTCAGCCATTTTCGCCATGTCCGACCAAAGAACGAAGCATATTAAAAATGTTCATATAAAACATAAGCAATTTCAGTGCGACTTTTGTCCGAGTAAATTCGTGACCGCTGGACAGTTAAAGAATCATCTTGTGAAGCATTCAGGACTGAGAGAATATCAGTGCAGTGTTTGTAAAAAGAGCTACGCAAGGGCTAGGACTTTAAAGGAACATATGAGGATACACAATAATGATAGACGATTTGTTTGCGAATATTGCAATAATGCCTTCATCCAAAAGTGCAGTCTTAAGAGTCATTTGAGAACGCACCATCCAACCGCGGAACCTACTAAGATTGCGGTTTAA
Protein Sequence: MGNEAALKLGSSENLNVEDPLKVTEKKRYQRSARAEARLATKKNASAILECWNLCPFRWKRNRFKCAYCEDNFIECTELRSHIRLCSTQHCIKDIYSKFKEMSLINIDVTDAICRICAMPFQGINEMRNHVIEHGFVFDTSHPDGVLPFFLDKESWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHREKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELAEESEKRIAKTMMRRNALTILECSTAWAFRWFQSAYYCSYCDVKFVDPLLLRDHVSSFHIADAPTKRIFSKLTENNMVKVDVSNVHCRICNCNIESIDYLKKHLMDVHDKTLNRDYNDGILPFKLDSNGFECQICCAHFTSFCKINEHMNTHFKNYICDACGKAFVSKSRFRTHVQSHETGSFPCGVCDEILETRVARMCHRSKVHKKGVRYTCPHCPEVFTTYYARAKHLVDGHNQQKQKYECFTCGKSFETSCKRAAHIRDGVAREITVKIEWKKARRATEDKANAALLLECSNAVAFRWMRGKFMCAYCPKICANVNEIRSHSQAHDKLLIFHKPEVRNSFPLRIDITNLKCSLCVFNCISLIDLKTHLTTDHEKSFNSKYSDGVIPFVLTSSEYRCVHCNTLFESYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGNIACPKCDLVFVNHVVKNRHVAMTHGTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVFNHAQEHSNRLEAMRYARPYDNVKIEISNLKCVICHNSMNDLEQLKEHLLIVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEIFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHNQSVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHLRTHHPTAEPTKIAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985355;
90% Identity: iTF_01507417;
80% Identity: -