Vcar024630.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- xbp-1
- Assembly
- GCA_905220365.1
- Location
- LR999935.1:2371929-2374110[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-16 1.3e-13 51.2 14.6 2 62 44 104 44 107 0.94 2 2 0.00012 0.14 12.7 0.9 32 55 88 111 87 116 0.91
Sequence Information
- Coding Sequence
- ATGAGTGCACCAATTATTATCACAGTTCCTAACAGTTATCTGGCGGTGGATGATATGGAGTCTAAAGTCGTGATCGACGTGGGTCCAAATCCACCGTCCAGGAAACGAAGGCTGGACCACCTGACATGGGAAGAAAAAATGCAAAGAAAAAAGCTTAAAAACCGAGTAGCGGCTCAAACTTCGAGAGACCGGAAAAAGGCGAAAATGGATGAAATGGAGAGCCGGATCAAAGAATGCATGGATATGAATGAGCGGTTAGTCAGTGAAGTTGAGAACTTGAAGGCGTTGAACGAACGTCTGCTCAGCGAGAACGCAACGCTGCGCAGCGAGGCCGCGGCGCGGACCGTCGCGGGTACCCCGAGACCAGCAGAGTCTCATCCTCAGCAGAAGGAGGGGCACCCGACGGCGATCCGCGCGGCGCGCCTGCTGCTAGCGATGTGCCTCCTCTCGCAGACCTCCTCGCCCATCTCGACTCTGAAGAGTACCTCGACACCCTTCACCAACTTGCCGACTCACTTCTCAAAGAATTTGATACAAACCCTGCAGCAGAGGTTGAAGATATCAAAGTTGGGGACAGTAGAGAGTGCACTCAAGGAAATCAAGTGGTGGGGTCCTCAACAAAGCAACTGGAATCCAGTCAAAGTGGAATCCTAG
- Protein Sequence
- MSAPIIITVPNSYLAVDDMESKVVIDVGPNPPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESRIKECMDMNERLVSEVENLKALNERLLSENATLRSEAAARTVAGTPRPAESHPQQKEGHPTAIRAARLLLAMCLLSQTSSPISTLKSTSTPFTNLPTHFSKNLIQTLQQRLKISKLGTVESALKEIKWWGPQQSNWNPVKVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077926;
- 90% Identity
- iTF_01078803;
- 80% Identity
- -