Vata012946.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- egg
- Assembly
- GCA_905147765.1
- Location
- LR990579.1:5151178-5174296[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 7.2e+03 -3.0 0.0 29 38 1485 1494 1459 1495 0.65 2 2 2.1e-13 9.3e-10 38.3 0.0 4 75 1526 1590 1523 1592 0.89
Sequence Information
- Coding Sequence
- ATGTCTTCACCAAAAAATACGGAAATTGTTAGTGATAAAGATGACGGGGAAGCAATGGCTTCTATACAATTAATAGTAAAAGACACAATTAAGTCGATTGATTTAGAAGAAAATGCAAACACGAATGTTGTAAACGACGAAGGGCTTTCCAGAGGTTTTGTAGAGGACGACGAAAACAGTTCTTCGATTGATAAAAACGTCGAAGAAATGTTGCTTGCTGATGCTAATCAGAATCCAGACAGTGACAATCTCGACGATGAAATGGAGTTAAGGTGGGATGACGATGACCTGGACGATGTAGATGAAATAAAGAATGAGGAGACATTGCTTGAAGAAAATTCGTTAGATTGCCCCAAACCTTATACTTTATCTTTGCAAGAGGAAGTCATTAAAACTATTGAAGCAGAAGAGAAGCTTCTGGATTTAGAAAACGATAATGAATCAAAAGAATCACCCCCAGATTCAATAACAGAGAGCTTATTTGCACCCAAAATAGATCACAATTTAAACAAACCTGATATGATGTTAGAAATTCCGAGTCATGAATTGATTGAATTTAGTGACGATGATGAGGATTTGACTAATAATCTGGAAATGTCTCCTGACTTAGAAAGTGATGAAGAAGTGTCTAATTCAACTGAAGTACCGATGCAGTCAACACAAGCTGATATTCATACAGATGGTGAGGTACAAAAAGAAGCAGAAGAAAATGCATTAATTGATAAAGAACTAAAAGAAACAATGGATTATAAGGCATTGGAGAATGAAGCTAAATTTGCAGCAGACATTCTCACCAAAGAGCTTAATGCTATGGATTCAGAATCAAATATTATCACAGACACTAATACAGATATGACTGAAGATTTTCTCTTAAAAGAAGACACAATGGAAGAAGATTGTCTTTTAAAAGATGACATAATACAAGAAGATTGTCTTTTAGAAGAATCTACAGTCCAAGAAGAAATCATTGATGATGGTAACAGTGTAAACAGTGAATCAGATCTAAATAAAGATAAAGACCAAAATAAAGCACCACTTGAGATCCAAGGTAATTCAGATGCTAAGAATACAGCCAATGAAACAGAACTACAAGATGAAGATACACAAAGCACGGAAGAAGATATAACTGATTTGTGTGAGGATATATTGCTAGCACCTAGTGATAATTCTTCAGATGCTATGGATTGTGTTACTGATTCAGAAATTAAAACAGCTTTTAAATCTGAAGCTATTGATTCAACTATTAATACAAAAGACACCAATATTCTAGAAACAGATTTACACACAAATGTAATAAAAGATAAAACAACAATGACAATTGAAAAAATATCTATAACAGAAACAGATATTGTGTCTGAAACTGTAGAACCAGAAACTGATCAAATAACATCACTGTCTAGTTCAACTAATGGAAATAAAAAACCAGACACAGGCTTGACTGATACTGTCCCATCAATTGAAGATTCAAAAGAGGAAGAAAAAGCCATATTAGATGAGAAAATAACGTATTTGGAGGAAACAAATAAAAGTGAGGACGAAAATACTGAGGTTACACACACAGAAGATACAGATATAAAACAAATTACTAAAGATGAAGTACTCAATCTTTTACAATTAACAGTATCAACAAATGAATGTTTATCTACATCGGAACCTAATGTAGATTTACAGGGAGATAAACCTGATCTACCTATGTCAAAAACTTCTGAGAAAAACGATGAAGATGCACAAGTTGAAGTAATCCCAGCACAGACAATGGATGTTGACGAACCGCAACCCTCAACATCTTTCGCTTGCCCTGAAACATCAAAAGGGACAATCGAACAATCGTCAATGTTTGGCTCATCTATGGTACAAGATACATCCAAAGATGTACCGGAAATGACAGACAGTCTCGGACTTTTGGCTGAGTCATGTAGGATGATGGAGGAAGATGAGGAGCAGGAATATGATGATGATGGTGATGGGGAAGATGAAGATGATTTTGACCAAGATGATGAAAGCAGCAATCAAATGACCGCAGAGCATTCTGAAGATTCAAACGCTCAGCATTCGGAGTCTGAAGTGCAAAAAGATCTGCAACCTGACTTTACTGCTGCTGACACTAAAACTACGGATTTGCAGGAAACTAATGGAAATGATGTTGAATCGCAGTTAGAAAATGATGATAAAAAACAAAACCAAGAGATGGATATCGAAACGGTGAAACTGTCAGACACTTCAGATGTGGAAATCGATTTGGAGAATGGAGAGACTACTATACTAAAAAAATTATTGTTAAAAACAACAGATACACTTGTATCGGATGATGTTGTAGAAGAGAAAAAATCTCCGAGTAAATCTAAAAATTTGGAAATAGTAAAACAGGAGACGTTTATGAGTATTGTTGACCTTGAAGAGAGCTCCTCGGAAGACGATGTTAAAGAAATGAAGGAAGAAACTGCAGCTATACATGAAGAAGACGCAACTAAATCTGATGAGTCCAGCAGTAAAACTGTTGACGCAAATATTGGAGTTAAAGAGGAAACTCTTGACGGTGGACTGAAAACGTCACCATCAAAAACTGTGACACCAGATATAGTAGACGATACGAAAACACCCCCCCTTGGAGATTCAACCGTAGTTAGTCAAGAAAGCAAGCCGAAAGCGCCAATGGGTTTAGAAGTTTTCACCCTAGATTCCGATGAAGAAGAACAAACCGTACCTCAAGAAGTTGCTGAGGGTTCCCAAGCAGAACAAAGTCAGGATGTCAAAGAAGAGACGAAGAGCGAACCACTCAAATGCATCAACAGGTTATGTCCGGGCGAAACTGGCGTTGAATTCTATATAGCAGACAACGAAGCGATTAACTTCTTCGACGCGGACAAGAAGAAGCGCGGCTACGTGTGCCAGAACTGCTCTGATGCTGTGGAGAAACGCAACCAGGAACTGATAGACGGTATCAAGAATTTCACTCCGCTCCTGGAACTGGGTATCAACAAGAGTGGCGAGGAGTTGGTCGAGATATCAGACTCGGAGTCTGAGGATGAACCCGAACTTGACCAGGATCACATGCAAATCATCGGAGTAGAAGGCGCCAAGATAGCGGAGGAGAAGCTCGCGTTGATGTTAAACGAGACGTGGGAGAAATTCAAAATGGACGAACGTTTGACGGACACGCAGAACACGTTGCAGAAAGAAATGGAAAAACTGCAAAAGGAAAGCGAGGAAATCGACGAACTCCTCAATGAATGTCAGGTAGCGACGGATCAGCTCCGGAACGAGCTCTACGCGACCTTCGAGCCGGATATCCGGGAACTGCCGCCTTTTGTCATATACGATATGCCGAACTGCTCGCCGACACCTCTGAAACGACCTCGTTCGCCGTCCAAAGAGGTCCCGGCCAAGCGTCCCGCTATACCGCTGGGGTATGCGCCGTTAGATGAAAAAAGTAGCGAGGAATCGAAGAATATAACAGTGGCGAGCGAAAAAGCAGAGGACGATAATACGGACGTGTCCGTCGTAAAGTTGTCGGCGGAATCGGCGCCAAAGGACCTCCCCCCGCCGGGAGAAATCACGATGACGCCCCTCAAAGCCGGCATGGCAGTGTACGCCATGAAGAACGCCTTCGGTTCCTGGCTCAAAGCGAAGATCGTTGACATATTACCGAAGCCAGCTAATTCAACGTTCACACTATGTCGTGTTAAATTTGAACACAAGGTGACGAAGAATCTGTACAAGATCTTGCCAGCGAGATGTCTCGCGTACTACGAGCCGCCTGATGTGCGAATGACCATTGGCCGTCGTGTTATAGCACTTTTCAAGGACACGAATAAGCGTGAGACTTATTATTCTGGAATCGTAGCCGAAATACCGAATCCCGTTAATTCTTATCGCTACCTGATCTTCTTCGACGACGGCTACGCGCAGTACGCCCAGCACGCACAGACGCGCCTCGTGTGCGAGTGCTCGTGCTTCGTGTGGGAGGAGGTGCACCCCTACTCGCGCGAGTTCGTGCGCCAGTACCTGTTCGCCTACCCCGAGCGACCCATGGTGCGCCTGCACGCCGGCCAGAACCTCAAGACCGAGTGGAGGGGCAAGTGGTGGTCGTCGCGCGTGGTGCGCGTGGACGCGTCGCTGGTGGAGGTGCAGTTCCTGCGCCGCGACCGCCGCGAGTGGATCTACCGCGGCTCCACCCGCCTGGCGCCGCTCTACCTCGAGCTGCAGGCGGCCGAGCGCCACCGCCCCCGCGCCGTGCCGCGCGCGCAGCCGCAGCCCCGGACGAACATGCCGTACGTGGAGTACACGCGATCGGATGAGCAAACCGGCAAGGCCGAGCCGCAGTCTCCGCAGCAGCAGCAGCAGCGGCCGCAGCAACAGAATGAGGAGATGCGTCGTCAGCGTGCGGTCGCAAAAAAGTCGACCACCACCGTGCAGACACCGCTGCCGCCCAGCGCAGACAACCTCGACAACGTCACCAGCAGAGTGGTGTATTACACGCCAAAGAACGCGGTGAAACCTTACAAAATGGTACCGCATACATGCTCGCCGAAATGCAAGAGGACAGACGTCCTGGCACTCAAGGATCTCCGAACCTACAACCCTTTGGCGAAACCGCTGCTGAGCGGCTGGGAAAGGCAGGTGGTGCGCTGGAAGGGGCAGCGCTGCGTGCTGTACGTGTCGCCGTGCGGGCGCCGCACGCGCGACGTGCGCGAGCTGCACGCCTACCTGCGCGCCGTGCGCTCCGACATGCCCGTCGACCTGTTCGACTTCTCGCCCGCCACGCACTGCCTGGCCGAGTTCGTGCTCAACAAGTGCTTCGTCGGCAAGAAGGACCTGTCGCACGGCAAGGAGAACGTGCCGGTCCCGTGCGTGAACTACTACGACGAGTCTCTGCCGGAGTTCTGCTCGTACAACACGGAGCGGACCCCCACGGCGGGCGTGCCGCTCAACCTCGACCCCGACTTCCTGTGCGGCTGCGACTGCGACGACGACTGCGAGGATAAAACAAAGTGCGCTTGCTGGAAGATGACTCTAGAAGGTGCTAGAACGATCGGTCTGGAAGGCGATAATGTTGGCTACGTGTACAAGAGGCTGCCGGAGCCCTTGCCGTCGGGCATTTATGAATGCAACTCCAGGTGTAAATGTAAACACACGTGTCTAAATCGCGTCGCGCAGCACCCGCTACAGCTTAAGTTACAGGTATTCAAAACTCTGAACCGAGGATGGGGTATAAGAGCCCTCAACGACGTGCCCAAGGGGTCATTCCTTTGCGTGTACGCGGGAAATCTGCTCACAGATGCGACGGCGAACTTGGACGGTCTCAACGAGGGGGACGAGTATCTGGCCGAGTTGGACTACATCGAGGTCGTGGAGCAGATGAAAGAGGGCTACGAGGAAGATATACCGGAGAGCATCAAGAAGCTCGATAAGGTTAGATAA
- Protein Sequence
- MSSPKNTEIVSDKDDGEAMASIQLIVKDTIKSIDLEENANTNVVNDEGLSRGFVEDDENSSSIDKNVEEMLLADANQNPDSDNLDDEMELRWDDDDLDDVDEIKNEETLLEENSLDCPKPYTLSLQEEVIKTIEAEEKLLDLENDNESKESPPDSITESLFAPKIDHNLNKPDMMLEIPSHELIEFSDDDEDLTNNLEMSPDLESDEEVSNSTEVPMQSTQADIHTDGEVQKEAEENALIDKELKETMDYKALENEAKFAADILTKELNAMDSESNIITDTNTDMTEDFLLKEDTMEEDCLLKDDIIQEDCLLEESTVQEEIIDDGNSVNSESDLNKDKDQNKAPLEIQGNSDAKNTANETELQDEDTQSTEEDITDLCEDILLAPSDNSSDAMDCVTDSEIKTAFKSEAIDSTINTKDTNILETDLHTNVIKDKTTMTIEKISITETDIVSETVEPETDQITSLSSSTNGNKKPDTGLTDTVPSIEDSKEEEKAILDEKITYLEETNKSEDENTEVTHTEDTDIKQITKDEVLNLLQLTVSTNECLSTSEPNVDLQGDKPDLPMSKTSEKNDEDAQVEVIPAQTMDVDEPQPSTSFACPETSKGTIEQSSMFGSSMVQDTSKDVPEMTDSLGLLAESCRMMEEDEEQEYDDDGDGEDEDDFDQDDESSNQMTAEHSEDSNAQHSESEVQKDLQPDFTAADTKTTDLQETNGNDVESQLENDDKKQNQEMDIETVKLSDTSDVEIDLENGETTILKKLLLKTTDTLVSDDVVEEKKSPSKSKNLEIVKQETFMSIVDLEESSSEDDVKEMKEETAAIHEEDATKSDESSSKTVDANIGVKEETLDGGLKTSPSKTVTPDIVDDTKTPPLGDSTVVSQESKPKAPMGLEVFTLDSDEEEQTVPQEVAEGSQAEQSQDVKEETKSEPLKCINRLCPGETGVEFYIADNEAINFFDADKKKRGYVCQNCSDAVEKRNQELIDGIKNFTPLLELGINKSGEELVEISDSESEDEPELDQDHMQIIGVEGAKIAEEKLALMLNETWEKFKMDERLTDTQNTLQKEMEKLQKESEEIDELLNECQVATDQLRNELYATFEPDIRELPPFVIYDMPNCSPTPLKRPRSPSKEVPAKRPAIPLGYAPLDEKSSEESKNITVASEKAEDDNTDVSVVKLSAESAPKDLPPPGEITMTPLKAGMAVYAMKNAFGSWLKAKIVDILPKPANSTFTLCRVKFEHKVTKNLYKILPARCLAYYEPPDVRMTIGRRVIALFKDTNKRETYYSGIVAEIPNPVNSYRYLIFFDDGYAQYAQHAQTRLVCECSCFVWEEVHPYSREFVRQYLFAYPERPMVRLHAGQNLKTEWRGKWWSSRVVRVDASLVEVQFLRRDRREWIYRGSTRLAPLYLELQAAERHRPRAVPRAQPQPRTNMPYVEYTRSDEQTGKAEPQSPQQQQQRPQQQNEEMRRQRAVAKKSTTTVQTPLPPSADNLDNVTSRVVYYTPKNAVKPYKMVPHTCSPKCKRTDVLALKDLRTYNPLAKPLLSGWERQVVRWKGQRCVLYVSPCGRRTRDVRELHAYLRAVRSDMPVDLFDFSPATHCLAEFVLNKCFVGKKDLSHGKENVPVPCVNYYDESLPEFCSYNTERTPTAGVPLNLDPDFLCGCDCDDDCEDKTKCACWKMTLEGARTIGLEGDNVGYVYKRLPEPLPSGIYECNSRCKCKHTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPESIKKLDKVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507240; iTF_01508085;
- 90% Identity
- iTF_01508085;
- 80% Identity
- -