Ucar023353.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- MBD2
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:121844316-121846754[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-27 4.9e-23 81.9 0.0 1 72 7 73 7 87 0.93 2 3 0.00062 5.8 7.9 0.0 29 72 236 290 217 295 0.79 3 3 1.9 1.8e+04 -3.2 0.0 36 45 297 306 297 308 0.80
Sequence Information
- Coding Sequence
- ATGAGTTCAAGCATTACAATAGAACGTAAGCGAGTAGATTGTAATGCTTTGCCAAAGGGCTGGCAAAGGGAGGAGGTTTTACGTAAATCCGGCATATCGGCTGGGAAAGTGGATGTCTACTATTACAGTCCAACTGGTAAACGAATCGAAAGTAAGCCACAATTGGCAAGATACCTTGGCGATGCTATCGATATTTGTGCATTCGATTTTCAAAGCGGCAAATTCGTACGTCACTTGCCGCCACCTTCGATTTCACTATTCCGTTGTAGCAGTAGCGGCAGTTTAACTATCACCACCGCCAACAGCGGTACCGTTGGTAGTGATACCATATCAATGCCACCACCTCCGCCACAATGCAATAACAGTAGTGCCAACAACAGCACTTTGTCCCTATCCGTTCCTTACTACACCACAAATACTACACAATTGCCAATCACTACAAATGCCAATCCATTGCATTCGCCAATGtctacaacaacagcaacaactagTACATCAAATGCGTTAAAGCGCAAATATAAGTCACAATCCCAATCCCAAATGCATAGCCCCAATCAAATGTCATCGCTAGGCCATCAGATGCCGCAGGGCACACATACGATTGCCATAAGTAGCAGTTGTGGCTCAACGGGTGCATCTGGTGCTGTCAATAGTAGTACATCGACATCAGCAATTTCACGTCAGCAATTAGAATTCAGTCGTACGCCGCGCACAGACGCCGCACTGGTACCACCCATCCGACAGACTGCCTCGATTTTCAAACAACCCGTTACGGTGGTACGCAATCATGAGCATACAAAAGTGCGAAATGATAATACAAAACAGACAAGTGGCCAAGAGAAGCCGAAGCAAATGTTCTGGGAGAAACGTTTGGAGGGTTTGCGCGCCTGCCACCCCACCGGCGAAGAGTTCGAGGATATCGTGCTACCAAAAAGTATACGCGCCATTGGTCCGAATGTTAGCGAACAAACTGTATTACAATCGTTGGCCACGGCTTTGCACGTACTCAATGTGCCGGTTATGGGCCAAGCATCTACCAAGACTGAGATGAATAAGAATGCAACGGCATTCTTAAATCCCGAACAACCACTAATGCAGGCGGTATTGGTGTCGGATGAAGATATACGCCGGCAGGAGGAACGTGTGAATGCGTCACGTAAAAAGCTGCAGGATGCACTTAAAGCTTAG
- Protein Sequence
- MSSSITIERKRVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIESKPQLARYLGDAIDICAFDFQSGKFVRHLPPPSISLFRCSSSGSLTITTANSGTVGSDTISMPPPPPQCNNSSANNSTLSLSVPYYTTNTTQLPITTNANPLHSPMSTTTATTSTSNALKRKYKSQSQSQMHSPNQMSSLGHQMPQGTHTIAISSSCGSTGASGAVNSSTSTSAISRQQLEFSRTPRTDAALVPPIRQTASIFKQPVTVVRNHEHTKVRNDNTKQTSGQEKPKQMFWEKRLEGLRACHPTGEEFEDIVLPKSIRAIGPNVSEQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSDEDIRRQEERVNASRKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- -
- 80% Identity
- -