Ucar038148.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Urophora cardui
Gene Symbol
sip1
Assembly
GCA_960531455.1
Location
OY482674.1:111218873-111221712[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.3e-95 2.2e-90 304.4 17.9 1 275 417 689 417 689 0.98
2 2 0.12 2.7e+03 -1.0 0.0 243 266 702 725 694 742 0.65

Sequence Information

Coding Sequence
ATGTCTGATAATGAATACGAACGCTTTGAAATAACCGACCATGATTTGGATACCGAATTTAATCCACGGCGCCGGCATCTTTCAAAGAATCAACAAATTTATGGAATTTGGGCTGATGACAGTGATGATAGTGGCGAAGAAACCAGCAACCGGCGAGGACGTCGCGGTGCCGGAAAGAAATCCAAAGACTATACAGCGCCTGTCTCCTTTGTGGCTGGTGGAATACAGCAAGCTGGCAAAAAGGGAAAAACGAAAGAAAAAGATAATGATCAAGAAATAACGGACGAGGAGAGCGAAAATGAAGACTCAGATGATGCACGGCCATCATTTGGTGGTCGTGGTAAACAAGTAGAGGATGGTAGAGCGGAAAGCGGCAGTGGTTCGGAGACGAGCTCCGAAGATGAACGCTCACAACAGAGACGTGCTGAAGCGGCTCGTAAGCAGCGTGGCAATAGTGCACGACACACCAGTAATCCAAATGTGGGTGCATGGGAACAGCATACCAAAGGTATCGGTGCCAAACTACTGCTACAGATGGGCTATCAGCCTGGCAAAGGTTTGGGTAAGGAGTTGCAAGGTATTTCACAACCAGTGCAGGCGCATGTGCGCAAGGGACGTGGAGCAATTGGAGCGTATGGACCAGAGGCAGCAGCAAGTGTTGGTGGGAAGGGACCAGTTGTGAAGGAAGATGAAGATGTGCGCGAAGCCAAAGAATTCAAGGAAAAACTGAACAAATGGAAGAAGACCACAGATGGTCGTCAAGAAAAGGGCAAGCGTTACTACTATCGTTCGGTGGAGGAAGTGATTGAGAAAGGCAAGAAGAATTTTATGTTTACAGAGAAAATCAGCAAAAACATTGGCAACGTACCCGTTATTGATATGACTGGACCTGAGAAGCGTGTGCTCAGCGGTTATCACGCTTTGGCACAAACCAAAGTTCCCGACGAAGAGCTCTACGACTTGGAGCAAGCTGTAGCAACCAGTAGCATTAACAGCGCTAAGAAAGCTGGCAGCACATTCGCTCTACCCGAATTGACGCACAATCTCCAGCTAATTGTGAATATGTGCGAACAAGATATCATAGCGCTTGACAAGGCTGAGCGTGAAGCCACCGATCGACAGGCAGCGCTCGAGCATGAACGTAAAAATCTGAATGAAATTGTACAATTGGAAAAGAATCACATCGATACATTAGAACAAGCACTGAAGTTGGTCGAGGAACTGTCTTCAAACAGTGAAGAACTAACACTTCAACGCGCTGAACAAATTTTCGTTACACTTCAACAAAATTATGCCGCAGAATATAAGGAGTTTGCATTGGGCGATTTGGCTgcaggtgttattgcgccattAGTTAAGCTAACGCTGGAAAATTGGCAACCGCTTGAACAGCCAACAATACATGTCGAGCTGATTAAAAAGTGGCGTGGCATATTGGAGACGCATGCGGCGGCCAACCAGTTGGACAGTGAAACGCGTAACATTTTCGATCCGTACTCATCGCTTGTATGGGCAGGTGTGATACCGAGTTTTCGTGCATGTGCCTCCTCATGGAATCCCAAACAGCACCAACCAATGGCTGCTTTACTCGACTGTTGGGCTCCCCTTTTTCCCACATGGATATTGGATTCAGTGCTTGAACAGTTGGTGCTGCCACAGCTGAGTAATGGCGTACGTGATTGGGATCCGCTCACCGACACCGTACCCATACACATTTGGATTTTGCCATGGAATAATATTTTGGGTCATAAAATGGAGGAATTCATCTTTCCAACCATACGCGAGAAATTGGCAGCCGCCCTGCAAGCATGGATGCCACAAGATCGCTCTGCACGCGCTATGCTGACGCCATGGAAGGACGCTTTCGATGATAGCGAAATGCAACTATTCCTCGTACAACACATAATACCCAAGCTGCAAATGGTCTTGAATGAATTCATTATAAATCCACTACAACAACAGCTGGAACTGTGGAATCAAGTATGGGAATGGCATGAACTCATACAGCCACAAAAAATGGCTCAACTGCTCGATAAATGTTTCTTTCCCAAATGGATGCAAGTGTTGGTGTTGTGGTTGAATCAATCGCCCGATTATGCGGAGATTTCACGTTGGTACACCGGCTGGAAGGGTATGCTCAGCGATGAGGTGCTAAATGAGCCAGGGATTAAGGAGCACTTACGTCGTGCGCTCGAAATGATGCATCGCGCCACAGATGCGCAAGCGCAAGGTTTAGCAACTGCCGGCGGTATACCTACACCGCTAATGAGCGCCGCAACGCAACaaccgccaccaccaccaccgccaaCAATGATGGATATACAAATGACTGCGACGGCGGCGGCGGTGGCGGCAACAGCAACGGCGCCACAATTAGAATTCAAAGAGTTGGTCTCACAGAAATGTGCTGAACGTGGCATTTTGTTTGCGCCCATGCCGGGTAGGCGCGAATTTGGCAAACAGGTATATCGCGTTGGCAAGCTTTATTGCTATATCGATCGTAATGTTTGTATGTTGAGCGATGGCAGCATGAAAAATTGGATGCCCACTGCAGTGTCGCAGCTACTAGAACGTGCGGTGACTGGTGTGCCGTAG
Protein Sequence
MSDNEYERFEITDHDLDTEFNPRRRHLSKNQQIYGIWADDSDDSGEETSNRRGRRGAGKKSKDYTAPVSFVAGGIQQAGKKGKTKEKDNDQEITDEESENEDSDDARPSFGGRGKQVEDGRAESGSGSETSSEDERSQQRRAEAARKQRGNSARHTSNPNVGAWEQHTKGIGAKLLLQMGYQPGKGLGKELQGISQPVQAHVRKGRGAIGAYGPEAAASVGGKGPVVKEDEDVREAKEFKEKLNKWKKTTDGRQEKGKRYYYRSVEEVIEKGKKNFMFTEKISKNIGNVPVIDMTGPEKRVLSGYHALAQTKVPDEELYDLEQAVATSSINSAKKAGSTFALPELTHNLQLIVNMCEQDIIALDKAEREATDRQAALEHERKNLNEIVQLEKNHIDTLEQALKLVEELSSNSEELTLQRAEQIFVTLQQNYAAEYKEFALGDLAAGVIAPLVKLTLENWQPLEQPTIHVELIKKWRGILETHAAANQLDSETRNIFDPYSSLVWAGVIPSFRACASSWNPKQHQPMAALLDCWAPLFPTWILDSVLEQLVLPQLSNGVRDWDPLTDTVPIHIWILPWNNILGHKMEEFIFPTIREKLAAALQAWMPQDRSARAMLTPWKDAFDDSEMQLFLVQHIIPKLQMVLNEFIINPLQQQLELWNQVWEWHELIQPQKMAQLLDKCFFPKWMQVLVLWLNQSPDYAEISRWYTGWKGMLSDEVLNEPGIKEHLRRALEMMHRATDAQAQGLATAGGIPTPLMSAATQQPPPPPPPTMMDIQMTATAAAVAATATAPQLEFKELVSQKCAERGILFAPMPGRREFGKQVYRVGKLYCYIDRNVCMLSDGSMKNWMPTAVSQLLERAVTGVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00081221;
90% Identity
-
80% Identity
-