Ucar009220.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Uropetala carovei
Gene Symbol
C08B11.3
Assembly
GCA_036926305.1
Location
JAXCHB010000015.1:1558097-1601166[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-18 4.1e-13 52.4 0.0 2 78 296 375 295 376 0.93

Sequence Information

Coding Sequence
ATGGGACTTGATGCACTTGGCAATGTAGCTTCAGAAGTAGGGATCGAAGATCCAGTTTCTGATCAACTAGCGGCAATGCTTCTCGCCACATTGACTAAGGGACTTGCTTCACCTGACCGTTATGTTGTCCTTTCCTCTTTAGAAATCCTTAATAAGTTGAGtcaaaatgatgaaaatgaagaGGTAATGCTGAGGTGTCTTGATCAAAAGGTGTATGATCAAGTGTGTATGTTCCTGACCCTCCATGACATAATGTTACTTGTCTATACATTGGAATGTCTGTATTCTCTCACATCCCTCGGTGAACGTGCTTGCAATTCCATTGTCAGAGTTCATGGAGCAATTGATACCCTAGTTTCTCTGATCACTGTAGAGGCTCAAAGCTATGGTCCAAAAGCTTGCATTTTGATGCGTGTGGTGGAGACAGTTTCAGGAACAGCTCCAATGCCGAATGTAAATGCCTCTGTTCCTCACACTCCTTCCACTACACTGACCACAATGACTCCTGCGGTGGCATCTAGTGTACCTTTCCGTCCATCCCCTGTCATTCAGAGGCATCCACAGGTGCCTCAAAgaaCTCTAATAGGAGCACCTCAGCCTGCAGTTGCCACTCCTGTCAACCTCTCTGCTGCACAGCAGCAGTTGGGTTCTTCAATGGTTACGTCAACAGGAGCAATGAGCGCCACTGCTCCGTTGACTACACCATCACACATGACTGGTGCACATCATCAGCATTCCCAACTGGTACATCatcagcagcagcagcagctgcATCAAAATCAGCCAAATCAACACCAGATGCTCCATCATCAGGGAGTGGTTGTGGGAACTACGCCAAGCAGCATTCATCAGCAGCACCAGCAGCAAATGGCACAGGAAAATGAGCAGTTTGCCCTTGCATGGATTCGAGCGACTTATGACCAAGCTAATGGGTCTTGCATCGAGCAGTCTGACTTATATCGGCAGTATTTAGCTTCTTGTGCTAAGATAGGTCGACGTGGTGTTGTCTCAGCCTTGCAATTTCCACGATGTGTTAGGTCTGTCTTTGGAACTGCCATCGGACCAGTCCAGCGAGTGTCTCCCAGCGGATCAACGGAGTATCATTACGAGGGTATCAAGGTGCGAGCGAATGCCCTGTCCCGCTTTGCGTCTGCAGGGGTGGCACCCACTATGCCCAACCTCGCAGCCCCTTCCCCCCATTCAAACCCCTCCCAATTGCACCAAGCACAGCCTCAACAACACCTCAGGAAGCAAGTCCCCCCGATCCAGCACCACCAACTCCAACAGCAGCTTCACCACAGGCCAGACAGCACGGCCTCCCCTCCCCTAGTGTCTTCCCCGACGCCCTCGTGCTCACCTACCCCAAGTGTTGCCCCCTGCTCACCAATACTCAAGGCTCAGTTGAGTGCCCCACCCAAAGCATCCAAAGGGGAGAGTAAGAGCCAGGTGTTGGCTCATCCGCACCTCACGCAGGCCCTGCTTGGCAGCACAACAGGACCCAGaaactcccctcctcctcccatccaaCACCCACAGGCGTCGTCGTCATCCTCTCCTACTGCCACGTCATCAATTTCCTCGTCCGTCCCAGTCCCTCAGCCTCCGTCTTCTCCCTCTGCTCCTCCTGCTTCCCCATCCCCTTCGACCTCTGCCCCCTCGTCCTCTTCTTCCATGGGAACCCACACAGCTTCATCAAGCAGCGGCAGTTgcacctcctcctcttccctcatcAAGAGTCTGCTAGCATCCAAGGTAAACACGGGGCCCCCAGATGGGACCCCGTCCGTCGGGTCAATGCCTGACAGCCGACAACTGCAGCAGCAGAGGAACCCGACGCAGTGCATGAGTGGCATGACAGTGCCTTCCCCCCATGTTACTACCACCCCTATCCAATCCCATGCCCAAAGTCCACTGGTGACACCACCAACCATCTCCAACGAAACGCCGTTGTCCCCAGAGAGCAATCAGGTAGCACAACGGCAACAGCAGCAAAGACTCCTCATGCAGCTTCAGCAGCAACAAACTAGTGCACCAAGTAGTACCACCACATCATCTACTACCACAGTTGCAAATCCCATCAGTCCAAGGCCATCAACACCATCTTCAGTGACCAATGTGACAAGCACTACTAGTTCCACAATGACTGCACAGCTTGCTCAGCCACAAAAACTCCAACAAACACTCAGCCCTGTCACCAACAAAGCAGGCACTGTTGTTGGCACTGTCTTGACCACAGGAGTCATTAGTAAGATGAATGAGCCTACATCCCCACGTCCGAGAATTTCAAGGATAAATGGGGCCAGGATAGTAACAATGGAGATTGATGGTAAGGAAGTTTGGGATGTCAGTGCAACACCATTGTCTCCTCTGGGAACTTGGGGTGCTGATAAAGCAGATAGCAATCATTTATCAAATTCACCTCTGCGAGGACGTCGGGATCCACCTCAACCACCCCCACCACTGACGCCACATTCGTTGACTCCAAGTCCTCAACCAATATCAACAAATCTCCCTCCACCACTGGTTTCCATTGGGGGTGTTCGAAGCCCTGTTTGTGCTCCTCCACCAAGGCCAGATGAAGACTCTAACTCAGCTGCGTCTTCTTCTACTGTGTCGAGTGGTGTGACTGGAGGTGGCAATGCTACTTTGCAGACCACACCTCTTCCTGTTCCCTCAAATACTCCTAGTGCATCAGATGGTGATGAGAACTCTCTGACCAGTTTTGAAGGATTGCTTCTCAATGGTGGTACAGTTGTACCTCACTCATTAGACATTGATGGTAACAGTAGCATTGGTGGTGGATTGGCATCTAATGATGATGACAGTTCTTCTAAGGATTCTGCCAGAAGTGGACTTAGCAGGCTTCCTAATAGTAATCCTGTAGGTGGAGCCACAAAAGTGAAGGGAATGCTTGCAGATCTTCTGGAGAAGAAAGTAGGGCCAAGGGAGCCTCTGATTAATGGTGTATTGGGGAAAGAACTTAGAATTGGTGAAAAAGGTTTAGAATTGGTTGAAAATCATGAGACAGTTGAGCAGAATAACAATCCTTCTGATGATGGTAATAATGATGCACATCAGGCAGTGTCATCTGCAAGTGTTACACCTGTAAATCCATCCTCGGGAGTGGTTTCTTCTGAAACCGTTGTGACATCAGGGACTGTTACAACAACAACTACTACTACTGGAAGTCTTCATCCGGGAGCAATTCCTGGTGGAGTTGTAGTTGGTAGAGTTGTAATTGCTGGAGGAACACCTAACACAGTGTCGATGGGTGATGTGACTTCTCAGCAGCCTCCTCCATTAAGGACAGTGGTTATTTCTGCTGGTAATAGTAGTGGTGTGGTGGTCAGGCCAGGTGATGGTGTACTAGGTAGTATTGGTGGGGCCAATAATTCCAGTGATGCAAAGGTTCAAGTTGTAGGCTTGCTGGGGACCAATGCAGGTGGTGTGAGTGGCCAAACAGGGTCCATTCAGACTTTCCGAATTGCTGGTGGATTAGAAGAGTTATTAGCAGGTTCTCAAGTATCAGTAGAACAATTAAAGCAAATAATTCAGCAACAACAGTTGCAACAACAGCAGTTGCAGCAGCAACAACTGCAACAGCAACAACTGCAGCAACAGCAGTTACAGCAACAACAACAGCAGCAGTTACAACAGCAACAACAGCAGCAGTTGCAGCAACAACAACTGCAACAGCAATTACAGCAGCAACAACTGCCACAACAGCAGATGATTTCTCAACAGCAACAGGCACTAAAAAGACCTGCTCCTCCTTTAGCTCGGGAAGTCCAACCTGAAATTAAAAGGGTTCATTTGACTAATGTTCCAAATGGTAATAGTACCCCACCATTAATACCTATTGTGGGCAAGGATCAACAAGTTGGAATGCCAGTAGCTTACACAAATCAAGCAGGAAATACAACGGTTGCTACAAGCATTGCAGGAGGTACTATCCAGTACAGTGTTCAATCACAAGAAAATATGACGGTTGCAACCAATCATCAGCCACAGCAACAGACATCGCAACAACCTCAAATCATCATGAAACAGATAGATGGAACAGTAGCTGTCTCAAGTCAAGCAACCATGGTACAAAGTCCTGCACTTGCTGCACAACAGGTGCGACAGGTTTTAGTATCACAGGGTCAGGGTGGAGAGCAGCAGTTGATAGCTGTGGCACCCCGGCAGATAGTCCTTGCGGCTTCTCCAGGGAGCATTGCAGGTGGAACTGTCATCTCTCAAGGGACACAGACTGCCGTGCCACAGCATCACCAGATGGTTGCAATCCAACAGAAAGCAGGAACTGCTGGGATGTTGGTAGCAACTTCTGCTGGAGGCCAACGTCAGTTAGTACCTGGTCAAGTAATGATCTCGCAAGGTGGAGGGGGCCAAGTACTTGTTTCACATGCCCAAATGACATCTCAGGGTCCAGTGTTTGTGACTACTCAGCCTCCAAATACAGCAGGAACACAGCAATATTTGGTTGCGTCTAGTAGTGGAGGTGTTAGTGGTGGTGCAGGAGGCGGGGTGAACTATGTGGTTGCTCAACCTCAGACTGCTCTTGTACAGGGGCAGACGCAGACAGTACTTGTGGCTCAGACTCCTCAGCAGCAAGGCACAAGTGCAAAGACAATAATCATCCTCCAATCCCAAGGACAAAAAATGATGATGGCAACTGGAGGAAGTGGGGGACAACAAGTCGTGATGCAAGTTCCTCGTGCAGTGGCCACAGCTAGTGGTGCAAGCATCATCCAGGCAGCCAGTGGAGGACCTGTTACATCACAGGCTTGTGTGCAGGTTGCAGTATCTGCTGCGCAAGCTGTAATGGGTGGAGGACAAGGAGGTGCGGTTACAGTTGCTGTTCCTGTAGCCACAGCAGCTAGAGCTCAAATAGTAGGCAATCATGGTCTCATTGGACAGCCCCAAGTACAGATTCCGCagcaacagcaaattcaagttcAGCAGCAACAAATCCAAACGCAGACGCAGGTGCAGCAGCCTCAGCAGGTGCAACAAACACAACAAGTACAGAATCCCCAAGTACAAGTCCAGCAGCAAGTACAACTGCAGCCACAACAAGTGCAGATGCAGAGTCAGCAAGTGCAAGTCCAGCATGTCGAAGTACAGACCCAACAAGATCAACAATCCTCCCAACAATCGCTGCAGCAAACACAAACTCAGTCACAGCAACAAGCTCAACAGCAGCCTCTGcaacaacagcagcagcagTTGCAACAAATTCAGTTGCAACAGCAACTGCAACAGCAGCAAGTGCAACCTCAATTGCAACAGCAGCAAGTGCAACCTCAATTGCAACAGCAGCAAGTGCAACCTCAGTTGCAACAGCAGCAGCAACAGTTGCAACAGCAGCAACAGCAAGTGCAACAGCAGCAGCATTTGCAACAACAGCATCAGCAGCTGCAGCAGCAATTGCAACAGCAACAGCTGCAGCAACAACAAACCCAGCAAATCATTCAGCATCATCCAGCCCCACAACCCATGCAACAGCAGGATCAACTGCAGCAACCGCAGTTGGTTTTGCAGCATCAACAAATTCAGCTTCAGCCCTCAGTGACTCCGACTCCTGCACTTTCCCCTGCCCCATCTTCCTCCACTCCCACACCTTGTGCTTCGCCAGCTCCATCTGTCATAACCATGGCAATGAGTTCTCAACCGAAAGGACAGCAAGTAACAGTTTCCACCTCTCCTAAGCCCAACCTCTCCCCAAATGTCAAAGTTGCATCGGCAATGTGCAGTGTCGGTCTTACAAGTGGCACCACTGTCGGGAAGGGAATGCCTTCCCCATCGGTTGGTATGCCATCTCGGCCATCTACCCCCAGAGCGGGGCAACAAGGACATGACGTTGACCATTCCCCTCAACAACATCAGTCTGTCATTTCAAGCACTAATAGGGTGAATGCTAGCCCTAGTCCCCACAGGGAGTTGCACCATGTTCAGTTCCTCTGTGAATGGAGAGGCTGCATGAGGAGTTTCAAGTCTGCCAATGAGGTGTACATGCACGCATGCCGTGAGCACTGTCCAACAGCTGCCAATGAGGAGCAACAATGTCTGTGGGAGCGCTGTGATGGAATGAGGAGGAAACGATTTTCTCTGATGACTCATCTTTTTGACCGTCATTGTAATGCTGAGGTACTTCGTATGATGGCAATGAGACGAAGGCAGCTTTCACAAAGTGGGAGAAGCGAAATCCCTCCACCtacaccacctcctcctcatcctGGTTATGCACCAAATGCAGCCTTCCATGCCATAAAACGTCATGCCCTGGAGTTTGTCAACCCCAAGGAGCTCATGGTAAGTTGA
Protein Sequence
MGLDALGNVASEVGIEDPVSDQLAAMLLATLTKGLASPDRYVVLSSLEILNKLSQNDENEEVMLRCLDQKVYDQVCMFLTLHDIMLLVYTLECLYSLTSLGERACNSIVRVHGAIDTLVSLITVEAQSYGPKACILMRVVETVSGTAPMPNVNASVPHTPSTTLTTMTPAVASSVPFRPSPVIQRHPQVPQRTLIGAPQPAVATPVNLSAAQQQLGSSMVTSTGAMSATAPLTTPSHMTGAHHQHSQLVHHQQQQQLHQNQPNQHQMLHHQGVVVGTTPSSIHQQHQQQMAQENEQFALAWIRATYDQANGSCIEQSDLYRQYLASCAKIGRRGVVSALQFPRCVRSVFGTAIGPVQRVSPSGSTEYHYEGIKVRANALSRFASAGVAPTMPNLAAPSPHSNPSQLHQAQPQQHLRKQVPPIQHHQLQQQLHHRPDSTASPPLVSSPTPSCSPTPSVAPCSPILKAQLSAPPKASKGESKSQVLAHPHLTQALLGSTTGPRNSPPPPIQHPQASSSSSPTATSSISSSVPVPQPPSSPSAPPASPSPSTSAPSSSSSMGTHTASSSSGSCTSSSSLIKSLLASKVNTGPPDGTPSVGSMPDSRQLQQQRNPTQCMSGMTVPSPHVTTTPIQSHAQSPLVTPPTISNETPLSPESNQVAQRQQQQRLLMQLQQQQTSAPSSTTTSSTTTVANPISPRPSTPSSVTNVTSTTSSTMTAQLAQPQKLQQTLSPVTNKAGTVVGTVLTTGVISKMNEPTSPRPRISRINGARIVTMEIDGKEVWDVSATPLSPLGTWGADKADSNHLSNSPLRGRRDPPQPPPPLTPHSLTPSPQPISTNLPPPLVSIGGVRSPVCAPPPRPDEDSNSAASSSTVSSGVTGGGNATLQTTPLPVPSNTPSASDGDENSLTSFEGLLLNGGTVVPHSLDIDGNSSIGGGLASNDDDSSSKDSARSGLSRLPNSNPVGGATKVKGMLADLLEKKVGPREPLINGVLGKELRIGEKGLELVENHETVEQNNNPSDDGNNDAHQAVSSASVTPVNPSSGVVSSETVVTSGTVTTTTTTTGSLHPGAIPGGVVVGRVVIAGGTPNTVSMGDVTSQQPPPLRTVVISAGNSSGVVVRPGDGVLGSIGGANNSSDAKVQVVGLLGTNAGGVSGQTGSIQTFRIAGGLEELLAGSQVSVEQLKQIIQQQQLQQQQLQQQQLQQQQLQQQQLQQQQQQQLQQQQQQQLQQQQLQQQLQQQQLPQQQMISQQQQALKRPAPPLAREVQPEIKRVHLTNVPNGNSTPPLIPIVGKDQQVGMPVAYTNQAGNTTVATSIAGGTIQYSVQSQENMTVATNHQPQQQTSQQPQIIMKQIDGTVAVSSQATMVQSPALAAQQVRQVLVSQGQGGEQQLIAVAPRQIVLAASPGSIAGGTVISQGTQTAVPQHHQMVAIQQKAGTAGMLVATSAGGQRQLVPGQVMISQGGGGQVLVSHAQMTSQGPVFVTTQPPNTAGTQQYLVASSSGGVSGGAGGGVNYVVAQPQTALVQGQTQTVLVAQTPQQQGTSAKTIIILQSQGQKMMMATGGSGGQQVVMQVPRAVATASGASIIQAASGGPVTSQACVQVAVSAAQAVMGGGQGGAVTVAVPVATAARAQIVGNHGLIGQPQVQIPQQQQIQVQQQQIQTQTQVQQPQQVQQTQQVQNPQVQVQQQVQLQPQQVQMQSQQVQVQHVEVQTQQDQQSSQQSLQQTQTQSQQQAQQQPLQQQQQQLQQIQLQQQLQQQQVQPQLQQQQVQPQLQQQQVQPQLQQQQQQLQQQQQQVQQQQHLQQQHQQLQQQLQQQQLQQQQTQQIIQHHPAPQPMQQQDQLQQPQLVLQHQQIQLQPSVTPTPALSPAPSSSTPTPCASPAPSVITMAMSSQPKGQQVTVSTSPKPNLSPNVKVASAMCSVGLTSGTTVGKGMPSPSVGMPSRPSTPRAGQQGHDVDHSPQQHQSVISSTNRVNASPSPHRELHHVQFLCEWRGCMRSFKSANEVYMHACREHCPTAANEEQQCLWERCDGMRRKRFSLMTHLFDRHCNAEVLRMMAMRRRQLSQSGRSEIPPPTPPPPHPGYAPNAAFHAIKRHALEFVNPKELMVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01401927;
90% Identity
iTF_01401927;
80% Identity
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