Ufer006364.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- clz9
- Assembly
- GCA_950022985.1
- Location
- OX465519.1:18754251-18755990[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 2e-07 31.5 0.1 1 35 14 48 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCCCGTACCTACGTCCGTAAGAAAATTAAACCATATACGCCAGAAGACTTAGCCGAAgcgttacaaaaaataaaaaatggagaACTTACCATAACCACTGCAGCACAACAATACTCCATTCCAAAAGCAACTCTAAGTGAAAATATGCATTCTAAGTATTCCAGACCAACTGCAGGTAGACCTACAATCTTTTCATCGGAAGAAGAAGAACGCTTAGCAGATGCTataaaaataatggaaaaatgGGGATTTGGATTGTCAAGACAAGAAATTTTAGAAATTGTCGCTGAATACGTGAAGGTAAATGAGATTGAAACgccatttaaaaataacacgcCCGGTCCAGATTGGTTCATCAACTTTCGCAAACGTCACCGCCTGTCTATAAAGAAAGCACAGCCCGTGGAATATGTACGCAAAAAAATGACGGATCCATTTTTCATTTTCGAGTACTTCGAGTTGCTAGAAAAGACTTTGATAGAGTTGGATCTTATTGACAAACCTCAAAACGTCTGGAATCTAGATGAAACGTCTCTGTGTCTGGACCCTACTAGAACAAAAGTAGTGGGAGCCATCAATAAACCCTGCGCAAGAACCACTTACGGTTCTGGCAAGgaaaatataacagtattggcAGGTGCAAATGCTGAAGGCAAGAAATTACCACCTTTAATTGTGTTTAAAGGAAAATATGTTTGGGATCAGTGGATGGCTGCAACAGATGATTACGACTTCGAGTTATCGTATGCTGCAAGTCCTAAGGGGTGGATGCAGACCGACATTTTCTATAATTACATGAAGACGATTCTCATTCCAAGCGTAGGTCAGGAGAGACCAGTCTTGTTAGTGTATGACGGCCACTCTACCCATGTCGATGTAAAAGTTATAGAATTGGCAATTGAAAATGGCATTACCATTCTCAAGCTCCCACCACATACATCTCATTTGCTTCAACCGCTTGATATAGCAGTTTTCAAATCCTTTAAGAGCAAGTGGGATGCTAAACTAGTCGACTGGCAGCGTCGAAACATTGGCactaaaatggcaaaaaacatattttcaaaaacacttGCTGATACATGGCAAGAAACCGCACCCGACATCattaaaaatgggtttaaaAAAGCTGGAATTTTTCCGTTTGATGCCAGTGTTATACCTGTGGAGAAGTACGATCCAAATGCCTATAGAAGGTACCAGTTAATAAGAGAAGAGCGTTTGCTCCAAAGCCAACAAAACGCGAGTAGTCCGGAATCATTGAAGAAAATTTGTattgattatttaaataaacaaaataacatacCTGACGAAATTTTTCACAAACAGTGCCCACTGGACCAACAGAACGACACTCTTGGGGAACCGAAGTCTATAAACCACCAATTTACTAATATTCCAACTGAAAATGTAACCTTATTACCTCAAATTTCAAAATCTGATAGCCAAATGACGGCTTTTTTAGCTGAAGATTCAACCTCTATGCCAACATGTTTGAAAGAAGGTCGTTCTGATCCGAAAAACAACGAAACAGTtaaaaatcctaaattaattataaCATCTAACATTGTCATCAAAAAATCTTCCATAACTTTCAATGCAGCGCCACAAACATCTCTTTTACCAGCATCTCCAAGAATCTTCACATTTGAAGAAGCTTTTCTGAAAAAGATACAACAGGAAAAGAAAAACAATGATactgtgataaaaaaaaacgaatctcAAAAGGTGCCGAAGTGA
- Protein Sequence
- MPRTYVRKKIKPYTPEDLAEALQKIKNGELTITTAAQQYSIPKATLSENMHSKYSRPTAGRPTIFSSEEEERLADAIKIMEKWGFGLSRQEILEIVAEYVKVNEIETPFKNNTPGPDWFINFRKRHRLSIKKAQPVEYVRKKMTDPFFIFEYFELLEKTLIELDLIDKPQNVWNLDETSLCLDPTRTKVVGAINKPCARTTYGSGKENITVLAGANAEGKKLPPLIVFKGKYVWDQWMAATDDYDFELSYAASPKGWMQTDIFYNYMKTILIPSVGQERPVLLVYDGHSTHVDVKVIELAIENGITILKLPPHTSHLLQPLDIAVFKSFKSKWDAKLVDWQRRNIGTKMAKNIFSKTLADTWQETAPDIIKNGFKKAGIFPFDASVIPVEKYDPNAYRRYQLIREERLLQSQQNASSPESLKKICIDYLNKQNNIPDEIFHKQCPLDQQNDTLGEPKSINHQFTNIPTENVTLLPQISKSDSQMTAFLAEDSTSMPTCLKEGRSDPKNNETVKNPKLIITSNIVIKKSSITFNAAPQTSLLPASPRIFTFEEAFLKKIQQEKKNNDTVIKKNESQKVPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698210; iTF_01090693; iTF_00906061; iTF_00034639; iTF_01076369; iTF_01076370; iTF_01076371; iTF_01178430;
- 90% Identity
- iTF_00682319;
- 80% Identity
- -