Tjac008812.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- Zfy1
- Assembly
- GCA_947561695.1
- Location
- OX387227.1:10168305-10171514[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.067 5.4 8.2 7.1 1 23 146 169 146 169 0.95 2 18 3.3e-05 0.0027 18.6 1.1 1 23 178 201 178 201 0.96 3 18 0.016 1.3 10.2 0.3 2 23 214 236 214 236 0.97 4 18 0.00035 0.028 15.4 0.8 1 23 245 268 245 268 0.97 5 18 0.0029 0.23 12.5 3.2 1 23 280 303 280 303 0.96 6 18 0.00027 0.021 15.7 0.9 2 23 335 357 334 357 0.97 7 18 0.00081 0.065 14.2 1.6 2 23 367 389 366 389 0.96 8 18 0.086 6.9 7.8 1.8 3 20 395 412 393 414 0.91 9 18 0.00083 0.066 14.2 0.4 2 21 419 438 419 441 0.94 10 18 0.12 9.8 7.4 3.6 3 23 451 472 450 472 0.96 11 18 0.0046 0.37 11.8 2.5 1 23 477 500 477 500 0.93 12 18 0.00025 0.02 15.8 3.1 2 23 512 534 511 534 0.96 13 18 0.087 7 7.8 3.1 1 23 558 581 558 582 0.94 14 18 0.028 2.3 9.4 0.2 2 23 588 609 587 609 0.96 15 18 0.029 2.3 9.3 2.0 2 23 615 636 614 636 0.97 16 18 1 81 4.5 0.6 2 23 643 666 642 666 0.90 17 18 0.031 2.5 9.2 0.2 1 23 702 724 702 724 0.97 18 18 0.28 22 6.2 2.8 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATAAGGAAATAGTAGTTAAAGTTAAGCTTGAAAGAAAAGATCCTACCTCATTTTTGCCTGAAGAGCCAATGTCTTATGAAATAAAAAAAAAAAAGAAAAAGAAGAAAAAAAAAGATATAGAGGATCCATTTAAGGATATTGATGATGAAATGGATGTAAAGCCTGTTATAACGGAAATAATATCACCTGCTTTAGATCCTGAAGTAAATATAAAAGTTGAAAAAATTGAAGTTGAATTAGACTTTCACGATTTTACTGATAATTCAGGCCTCATGTTAGAAGGGCCACAAAGTGAAGATAGCCAGGAGCCAGCTGTAAAATTTGACAATCAAAACCATGAAGCTGTCCTGCTCACTTTTGAAAGTGTTATCAATCCAAAAAAAATGTTGCCACCAAAAGAAGAGCTGGATATTGTACCTAAGCCAGAGCACTTTTGCAAAGTGTGTCACCTGGTCTTTCAGTCTACAAAAACACTAAGAATGCATCAAAAAAGAAAACATAAAGCATTTAGAAAGTCATTCAAACATATTTGTGATTACTGTGGTATGTCGTATGAAACAAAAAACAGTTTAGTTGCACACATTAAACGTAAACATGGACCGAATTCAATGCCAGACGATAAAGAAGAAAGGACTTGCGAGATATGTGCATTGGTCTTTAAAGGTATAGCCAGGTTACGTATGCATATGAGACGGAAGCATGGATTATTCCAAGACTCCTTTAAGCATGTATGTGAAGACTGTGGTCTGACTTATGATAAATATAGAAGTTTAATTGTCCACATACAACGTAAACACTCAAATCAAACAAAGCCTGAAATCAGTCAGTGGTACAACTGCATGTTTTGTCAAAAGATGTTCACTAAAAGAGAAACTTACGCAAGACATGTACAAAGAAAACATAGAGTTGCTGATGATAATATAAAGCAAGAAAATCTTGCAGACAACTTAGAAGCAGGTTTAGAAAGTTGTATAAATGAACAAACAGGAGAAATCACTTGCAAGAACTGTCCCCTAGTCTTTTCTTCAATTAATTTCCTAAAACTACATATGCGTAGAAAACATAATGCCTTGAAAGAGGACTTCAGATTGAAATGTAGGATCTGTAACTTGTCTTATAATAAAATTGAAAGTCTTAAACGCCATGTGAGACGGAAACATGATAAAGGATCGCATTGCGAAGTGTGCAATAAACAATTTGATACCAGAGAAATGTATTTAAATCACTCCCACACAAAAGTTATAAGGGAGTGCTCAATTTGTGGGCTAATTTTTGCTTCCCAAGGTGGTTTAGCAAAACATTTGAGGTGTACACACAAAATAGACACACCAAAAACAGTCTTTTGTCATCTGTGCAATGAAGGTTTTCATGACAAAAGGCAGTTGAAACCACATCTCATGAAAGTTCATTTAAAGGTTTCATATACATGTATTTACTGCAAAAAAGTTTTTAAGGCAAAGGAGAGTTATAGGCGACATATTCTGTTCAAACATCCTTCTCCAAACTATGTAAACACTCAGCTGCAGAAATGTGAGCACTGTTCTGAGATGTTCAAAGATGAATTTGAACTATGCAAACATATAAACATAGTTCACAGACACTCAGATGAGAGTATATCTGATGGAATACATATAAAAAGAGAAGATGAAGATATTAAGAACAATTTCCAGTGCACTAAGTGCCCAGAGATATATTTGAATTGGGAACAATTAAAATTACATTACGAACAATGTCACCATAATATTGAACAAACTCAGTGTCAAATTTGTGGAGAAATACTTCAAGGGAATGAGTTACAGAAACATATAAAAACTTTACATACTAACAATGAAAAGCAATGTAAATATTGTGAATTTAAAACGAATATTAAAATAAGTCTAACGCAGCACATGCTCAGACACAAAAATGCTGCAACAATGCGTTGCGAGTATCCCGGATGTAGATATAAGACATTTTATGAAGGCGCTATGGAAAAGCATAGACGAAAGCACCTTGATCAGGGAGTTAAACTACAATGTACGCAATGTCCTTTCCAAACTATGAATAAGTACATTTTAAAATATCACGAGGAAGCACATGAAACTGGTAAAAAGAGATACACATGTGACCAGTGTGAGTATGCTACAATTCTGCCGGCAAACTTGGTGCAACATAAATATAAACATTCAACGGAGAAACGTTTCAAATGCGACGTGTGCTCTTTTGCAACAAAATACAATACGTCCTTAAGGTTTCATGTAAGAAAAAAACACTGTGATCTCCCAACATTCTGCTAA
- Protein Sequence
- MADKEIVVKVKLERKDPTSFLPEEPMSYEIKKKKKKKKKKDIEDPFKDIDDEMDVKPVITEIISPALDPEVNIKVEKIEVELDFHDFTDNSGLMLEGPQSEDSQEPAVKFDNQNHEAVLLTFESVINPKKMLPPKEELDIVPKPEHFCKVCHLVFQSTKTLRMHQKRKHKAFRKSFKHICDYCGMSYETKNSLVAHIKRKHGPNSMPDDKEERTCEICALVFKGIARLRMHMRRKHGLFQDSFKHVCEDCGLTYDKYRSLIVHIQRKHSNQTKPEISQWYNCMFCQKMFTKRETYARHVQRKHRVADDNIKQENLADNLEAGLESCINEQTGEITCKNCPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHTKVIRECSICGLIFASQGGLAKHLRCTHKIDTPKTVFCHLCNEGFHDKRQLKPHLMKVHLKVSYTCIYCKKVFKAKESYRRHILFKHPSPNYVNTQLQKCEHCSEMFKDEFELCKHINIVHRHSDESISDGIHIKREDEDIKNNFQCTKCPEIYLNWEQLKLHYEQCHHNIEQTQCQICGEILQGNELQKHIKTLHTNNEKQCKYCEFKTNIKISLTQHMLRHKNAATMRCEYPGCRYKTFYEGAMEKHRRKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHETGKKRYTCDQCEYATILPANLVQHKYKHSTEKRFKCDVCSFATKYNTSLRFHVRKKHCDLPTFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405296;
- 90% Identity
- iTF_00707232;
- 80% Identity
- -