Tjac022271.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387213.1:20355024-20364110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.2 5e+02 2.0 1.1 2 23 266 287 265 287 0.79 2 13 0.00054 0.043 14.8 2.0 1 22 292 313 292 316 0.92 3 13 4.7e-05 0.0038 18.1 2.2 2 23 438 460 437 460 0.94 4 13 0.0029 0.23 12.5 0.0 1 23 466 488 466 488 0.95 5 13 0.021 1.7 9.8 0.1 1 23 499 522 499 522 0.89 6 13 2.1e-07 1.7e-05 25.5 3.5 1 23 527 549 527 549 0.98 7 13 2.8e-05 0.0023 18.8 0.9 1 23 555 577 555 577 0.98 8 13 0.0001 0.0082 17.0 4.9 1 23 583 605 583 605 0.98 9 13 2.6e-07 2.1e-05 25.2 0.7 1 23 611 633 611 633 0.98 10 13 0.0023 0.19 12.8 4.0 1 23 639 661 639 661 0.98 11 13 8.9e-05 0.0072 17.2 0.3 1 22 667 688 667 688 0.95 12 13 0.0033 0.26 12.3 2.9 1 23 695 717 695 717 0.96 13 13 5e-06 0.0004 21.2 4.7 1 23 723 746 723 746 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTTTACAATTCTACTGTTTGTAGATTATGTGGGGAAGAAAATGATAATGGAACCTTATTATATTCTTCTGAAGAAAATAGTCCAAACTTAAGTGAAGTTATTAATACATATTTGCCAATCAAGGTATTTGATGATGGGCAACTTCCTCGGACAATTTGTCCAGGATGCGCAATTCAGTTGGAGGCCACCGTAGAATTTTTAACATTAATTATTAACGGACAGAAAGTAATTCGTGAACTACATCTTAGAGAGAGAGAATATAAAAAAACAATCCTAAATCCGCCCCCTGAACAAGATGTTATTACTGAAAAAATTGTATACGAAGTAAACACAAGCAATGGAGTATACCAGATGGAACATCCTATTTCTTTACAAGTAGCTGGTCTTGACAAACCTAAACGTAAACGAGGCAGGCCTCCTAAAAAGATCAAAACTCCTGAAGAATTAGCTCAAGAAACAGCTGCTAAAGAAAAGGAGTTCAACTCCCCAAAAATATGTGATAAGGATGAGGAGCCTACTGGAAAGCGGAGACGTAAAACACCAACTAGATTTAGAGAAGCTGTGCAGGGCAAAGAACTTGAAAGAATATTCAAAGAGGAAGGTGTGACTGATGGTGAGGAGAGTGACCGTGATGCGAAACCTAATTTGAACATTGATGTGAAGGTTCCTGTTTCCAAGGAGCCAGAAATTATAGGACATATGGAGAACTCGGGAGAAGTTGTGGTCTTTGTCAAAGGCAAGGGCAGGGGTAGACCAAAAGGCCCAATGCGCTTGACTCGCAAGGAATGTGCAATATGTGGCATGGAGTTCTCCTGTGCTGGACGTTACATGTCTCATGTTGCACATCATGGACCTGTCATATACCAATGTGGCCAGTGTAATAAGACATTTGATACTCATCTCAACTTTGCCAACCATCAAAAAGAGCTAGAACATGTTGGAAAAAATGTTATACCAATTGGCAAGAAGAATGCCAAAAATATACAGAACATATCAGATGTAATTAAAGTAGAACCACCAGAAGCAAGTACTCAGCCTATAACAGAGACACCTGATGTGGCAGTTAACATGTTACTAGACAATGTTATGACAGCCCTACCTGACCTTAATGCACAGCCTAACACCAAAGAGGCTGATCCATTGCCGATTGACAACCTCACCACTGAGATAACCTCTAGTGTTGATGATGCTGTTAAAACCACTGACACATCTACTGACGTAATAGAGGTAATAGAGGTTACAGAAAAGTCTGATGAGGTAGAACAAGTGGAGACTGCACCTGCAGGGAAAGTGAGACTCAAGTGTCCCCACTGTGATAAAACGTTTAGCAATAAGCAGAACAAGTCATTACATATTAAGGGGGTACACGTGGGCGAACGTCCATACTCGTGCGGTGAGTGCGGCGCACGCTTCGCCTACCCGCGCTCGCTCGCGCTGCACGCCGTCTCGCACCGCAGGCACCGCCCGCACAACGCCAAGGGCTACGCATGCGACCTCTGCGGGAAGGTTCTAAATCACCCGTCCTCGGTTGTATACCATAAAGAAGCGGAACACGCAGGCCAACGATACGTATGCAATAAATGTGGCAAATCCTTCAAGCACAAACAGTTACTGCAGCGACATCAACTTGTACACTCCCAAATTAGACCTTACACTTGCATGACTTGCAATGCTTCATTTAAAACCAAAGCAAATCTACTTAATCATCAGCTGTTACATACGGGCGTCAAGAAGTTCTCCTGTGAGATATGCAAACATAAATTCGCACACAAGACAAGTCTCACACTGCACATGAGATGGCATACGGGTCAGAAACCGTACTCCTGCAGCACGTGCGGCAAGAGCTTTAGCCAGAAGGGGAACCTGTCGGAGCACGAGCGCATCCACACCGGCGAGAAGCCCTTCCAGTGCTCGCTCTGTCCGCGCCGCTTCACCACGTCCAGCCAGCACCGTCTTCACGCTCGACGACACGCCGCCGACAGACCCTACGCCTGCACGCACTGCGGCAAGAGGTTCGTGTCGCGCGGCTCGTGGTCTGCGCACGTGCGGCGCGAGGCGGGCGGGCGCGCGCATAGATGTGGATGTTGCGGGCGCACGTTCGCGGAACGCTGGCCGCTGCTGAAGCACATGCGCACTCACTCAGGCGACCGTCCCTTCCGCTGTCCGCACTGCCCGCGCACCTTCGCCGACTGCTCCAATCTCAACAAACATAAGAAGCAAGTCCATAAACAGATCAGTTTGCTAGCCAACTCACAGCCCCAACCACAACCACCGACCCAAGAACTTGTCTCCTCGCAGAATTTGTCGGTTGACGTAAAATTGGAATCGCAAGAAGACTCCCTCGAGGAGAGGGTGATATATGTGGCGTACGATGTTGACGAGGCTGACTCGCCAGCATTCCACATACTTTCCCCAGAACAGGCGGCTGGTCTCGATGAAACCAAAGTGCTGACATCGTGCGAGTTATACTCGGGTCCATCTTTGTTAGGACCACAACCGGAACTGGAGCTGGAACCGCAACCATTGGAACAAGAAGAGTTGGAACAGCTGCAGGAACAACTCGTGTTAGATGGGAATGAACATATGCCTGTGACAGACGAGCAAGGCAATCCGCTTCATTTTACGATGCAGGATGGTACGAGACTCGCTATTACATCTGCTGATGGAAAATCCTTACAGGTGATAACCCAAGATGGCCAGACGATTCCTGTCGAGATTAACGGATACGCTGATGAAGAGGAGGTGGACAACCCCGACACGATAGTGCATCAATTGAATCTACAAAAGAGCGTCGACAACAACGCGTCGGCGCCGGTCACTCACTACTTCACTATTGTTTAA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSSEENSPNLSEVINTYLPIKVFDDGQLPRTICPGCAIQLEATVEFLTLIINGQKVIRELHLREREYKKTILNPPPEQDVITEKIVYEVNTSNGVYQMEHPISLQVAGLDKPKRKRGRPPKKIKTPEELAQETAAKEKEFNSPKICDKDEEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGEESDRDAKPNLNIDVKVPVSKEPEIIGHMENSGEVVVFVKGKGRGRPKGPMRLTRKECAICGMEFSCAGRYMSHVAHHGPVIYQCGQCNKTFDTHLNFANHQKELEHVGKNVIPIGKKNAKNIQNISDVIKVEPPEASTQPITETPDVAVNMLLDNVMTALPDLNAQPNTKEADPLPIDNLTTEITSSVDDAVKTTDTSTDVIEVIEVTEKSDEVEQVETAPAGKVRLKCPHCDKTFSNKQNKSLHIKGVHVGERPYSCGECGARFAYPRSLALHAVSHRRHRPHNAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQIRPYTCMTCNASFKTKANLLNHQLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCSTCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRRFTTSSQHRLHARRHAADRPYACTHCGKRFVSRGSWSAHVRREAGGRAHRCGCCGRTFAERWPLLKHMRTHSGDRPFRCPHCPRTFADCSNLNKHKKQVHKQISLLANSQPQPQPPTQELVSSQNLSVDVKLESQEDSLEERVIYVAYDVDEADSPAFHILSPEQAAGLDETKVLTSCELYSGPSLLGPQPELELEPQPLEQEELEQLQEQLVLDGNEHMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVDNNASAPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00795075; iTF_00824067; iTF_01360911; iTF_00282647; iTF_01198015; iTF_00823286;
- 90% Identity
- -
- 80% Identity
- -