Slub008742.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992279.1:20516227-20528503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.3 7.1e+02 2.0 1.1 2 23 266 287 265 287 0.79 2 13 0.00035 0.034 15.6 1.0 1 22 292 313 292 316 0.92 3 13 0.00046 0.045 15.2 1.9 2 23 436 458 435 458 0.94 4 13 0.003 0.3 12.6 0.0 1 23 464 486 464 486 0.95 5 13 0.025 2.4 9.7 0.1 1 23 497 520 497 520 0.89 6 13 2.5e-07 2.5e-05 25.4 3.5 1 23 525 547 525 547 0.98 7 13 2.7e-05 0.0026 19.1 1.8 1 23 553 575 553 575 0.98 8 13 0.00012 0.012 17.0 4.9 1 23 581 603 581 603 0.98 9 13 7.2e-06 0.00071 20.9 0.3 3 23 611 631 609 631 0.97 10 13 0.025 2.4 9.7 2.2 1 23 637 659 637 659 0.96 11 13 4.6e-05 0.0045 18.3 0.2 1 22 665 686 665 686 0.96 12 13 2.8e-05 0.0028 19.0 0.7 1 23 712 734 712 734 0.98 13 13 6.3e-06 0.00062 21.0 3.6 1 23 740 763 740 763 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTTTACAATTCTACTGTTTGTAGATTATGTGGGGAAGAAAATGATAATGGCACATTATTGTATTCTTCTGAAGAAAATCGTCCAAACTTAAGTGaagttattaatacatatttgccAATTAAGgtATTCGATGATGGACAATTGCCTCGAACAATCTGCCCTGGATGCGCTATTCAGTTGGAAGCCACCGTAGAATTTTTAACACTAATTATCAACGGACAGAAAGTCATACGGGAGCTACAtttgagagagagagaatataaaaaaaccatCCTAAATCCTACCCCTGAACAAGAAGTTATTACAGAAAAAATTGTTTACGAAGTTAACACAAGTAATGGGGTATACCAAGTGGAACACCCTATTGCACTACAAGTGGCTGGTCTCGACAAACCAAAACGTAAGCGTGGCAGGCCACCTAAAAAGGTTAAAACTCCTGAAGAGTTGGCTGAAGAAGCAGCCGCAATAGAGAAGCAGTTAACCTCTGTAAGAGTATCTGATAAGGAGGAGGAACCTACTGGAAAACGTAGAAGGAAAACTCCAACTAGATTTAGAGAAGCTGTCCAGGGTAAAGAACTTGAAAGAATATTTAAAGAAGAAGGAGTGACTGATGGGGAGGAGAGTGACCGTGAGATGAAACCCAGTCTTGACATTGAAGTGAGGGTTCCAGTGTCCAAAGAGCCAGAAATTATAGGTCATATGGAGAACTCTGGAGAAGTGGTGGTCTTTGTCAAAGGCAAGGGCAGAGGTAGACCAAAAGGTCCAATGCGGTTAACTCGCAAAGAATGTGCAATCTGTGGTATGGAGTTCTCCTGTGCTGGACGTTACATGTCTCATGTTGCACACCATGGACCAGTGATATACCAATGTGGCCAGTGTAACGAGACCTTTGACACTCGGCTTAACTTCACCAACCATCAAAAAGAGCTGGAACATGTTGGACAGAATGTTATCCCAATTGGGAAGAAAAATGCTAAAAACATACAGAACATATCAGAAATGATTAATATGGAAACACAAGCAGCTAACATTCAAGCCATAACAGAGACACCTGATGTGGCAGTAAATATGCTAGTGGACAATGTGATGACAGCCCTACCTGACCTAGGTACACAGCCCGACAATGAGGCTGAACAAATGCTCACTGACAACCTCACCACTGAAATAACTTCTAGTCCAAGTGTCGAAGGTGCTGTTAAAATTATGGatatatCCCCCGACGTAGTAGAAGTTACTGAAAAGTCTGATGAGGTGGTACATGTGGAGACTGTACCTGCGGGGAAAGTGAGACTGAAGTGCCCGCACTGTGAAAAAACATTTAGTAATAAGCAGAGCAAGTCATTGCATATTAAGGCGGCTCACGTGGGCGAGCGGCCGTACGTGTGCGGCGAGTGCGGTGCCCGCTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCTCACCGCCGGCAGCGACCGCGCGGGGCCCGGGGGTACGCCTGCGACCTCTGCGGCAAGGTTCTGAATCATCCGTCCTCGGTTGTATACCACAAGGAAGCTGAGCACGCAGGCCAACGATACGTGTGCAATAAATGCGGCAAATCCTTCAAACACAAACAGTTATTGCAAAGACATCAACTCGTCCACTCCCAAGCCAGACCTTACACTTGcaagACATGTGAAGCTTCATTTAAAACCAAGAGAAATCTACTTAATCATCAGCTGTTACACACGGGCGTCAAAAAGTTCTCCTGTGAGATCTGTAAACATAAGTTTGCACATAAGACCAGTCTCACGTTGCACATGAGATGGCATACTGGTCAGAAGCCGTACGGGTGCGCGACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTTCGCGTGCGCGCTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGCCAAGCGCCACGCCATGGACCGGCCCTACGCCTGCACGCACTGCCCCAAGAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACATGCGGCGCGAGGCGGCTGGCGGGGCGGCTGGCGGGGCGGCTGGTGGGGCGGCTGGCGGGGCGGCCGGGGCGGCTGGCGGGGCGCACCGCTGCTCGTGGTGCGGGCGCGCGTTCGCGGAGCGCTGGGCGCTGCTGAAGCACACGCGCACGCACTCGGGCGAGCGCCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAGCAGATCAGTTTACTGGCCAACCCACAGCCTCAAACCCAGCAGCCTCCACAAACAGTATCTGTCCCGAACAGTTCGCCCATTGACGTCAAATTCCAGAGCCAAGAAGACTCCCTCGAAGAAAGAGTCATTTACGTGACTTATGACGTTGACGAAGCTGACTCCCCAGCATTCCATATACTCTCACCCGAACAGGCTGTTGATCTTGATGAAAGTAAAGTGATGACAACATGTGAGTTGTATTCGGGCCCATCACTGCTTGTTCCACAACCAAAACTGGAACAATTGGAGCTGGAGCCTGCTCCTTTGGAAGAAGAAGAGTTGGAGCAGCTGCAGGAACAACTTGTGTTAGAAGGACATGAACATATGCCTGTGACAGATGAACAAGGAAATCCACTCCATTTCACAATGCAGGATGGCACAAGACTCGCTATCACATCTGTTGATGGGCAGTCTTTACAGGTAATCACACAAGATGGCCAGACGATTCCTGTTGAAATTAATGGATATGCTGATGAAGAGGAAGTGGACAACCCCGACACGATAGTTCATCAGTTGAATCTGCAGAAGAGCGTGGACAACAACGTGTCGGCTCCCGTCACTTATTTCACTATTGTTTaa
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSSEENRPNLSEVINTYLPIKVFDDGQLPRTICPGCAIQLEATVEFLTLIINGQKVIRELHLREREYKKTILNPTPEQEVITEKIVYEVNTSNGVYQVEHPIALQVAGLDKPKRKRGRPPKKVKTPEELAEEAAAIEKQLTSVRVSDKEEEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGEESDREMKPSLDIEVRVPVSKEPEIIGHMENSGEVVVFVKGKGRGRPKGPMRLTRKECAICGMEFSCAGRYMSHVAHHGPVIYQCGQCNETFDTRLNFTNHQKELEHVGQNVIPIGKKNAKNIQNISEMINMETQAANIQAITETPDVAVNMLVDNVMTALPDLGTQPDNEAEQMLTDNLTTEITSSPSVEGAVKIMDISPDVVEVTEKSDEVVHVETVPAGKVRLKCPHCEKTFSNKQSKSLHIKAAHVGERPYVCGECGARFAYPRSLALHAVSHRRQRPRGARGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQARPYTCKTCEASFKTKRNLLNHQLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYGCATCGKSFSQKGNLSEHERIHTGEKPFACALCPRRFTTSSQHRLHAKRHAMDRPYACTHCPKRFVSRGSWAAHMRREAAGGAAGGAAGGAAGGAAGAAGGAHRCSWCGRAFAERWALLKHTRTHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANPQPQTQQPPQTVSVPNSSPIDVKFQSQEDSLEERVIYVTYDVDEADSPAFHILSPEQAVDLDESKVMTTCELYSGPSLLVPQPKLEQLELEPAPLEEEELEQLQEQLVLEGHEHMPVTDEQGNPLHFTMQDGTRLAITSVDGQSLQVITQDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVDNNVSAPVTYFTIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502325;
- 90% Identity
- iTF_00824067; iTF_01198015; iTF_00823286;
- 80% Identity
- -