Cspo009544.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751331.1:6461884-6477353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.1 7.2e+02 2.3 0.8 2 23 266 287 265 287 0.80 2 13 0.00025 0.029 16.2 2.2 1 22 292 313 292 316 0.92 3 13 0.00043 0.05 15.4 2.8 2 23 441 463 440 463 0.94 4 13 0.012 1.5 10.8 0.0 1 23 469 491 469 491 0.94 5 13 0.035 4.1 9.4 0.2 1 23 502 525 502 525 0.88 6 13 2.7e-07 3.2e-05 25.5 3.5 1 23 530 552 530 552 0.98 7 13 1.1e-05 0.0013 20.4 1.4 1 23 558 580 558 580 0.97 8 13 0.00013 0.015 17.0 4.9 1 23 586 608 586 608 0.98 9 13 5.3e-07 6.2e-05 24.6 0.4 1 23 614 636 614 636 0.98 10 13 0.0047 0.55 12.1 3.0 1 23 642 664 642 664 0.98 11 13 0.00055 0.065 15.1 0.0 1 22 670 691 670 691 0.95 12 13 3.6e-05 0.0042 18.8 1.0 1 23 698 720 698 720 0.98 13 13 6.9e-06 0.00081 21.1 3.6 1 23 726 749 726 749 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATACCTTTACAATTCTACTGTTTGTAGATTATGTGGAGAAGAAAACGACAATGGAACTTTATTGTATTCTGGTGAAGAAAATAATCCAAACTTAAGTGAagttataaatacgtatttacCAATCAAGGTATACGATGATGGCCAACTACCTCGAACCATTTGTCCAGGGTGCACCATTCAACTGGAAGCCACCGTAGAGTTTTTAACATTGATAATCAATGGACAGAAAGTAATCCGTGAACTGCATCTAAGAGAAAGAGAATATAAGAAAACAATCCTAAATCCTGCCCCTGAACAAGATGTTATTACAGAAAAAATTGTATACGAAGTGAACACTAGTAATGGCGTATACCAAGTAGAACATCCAATAGCTTTACAAGTAGCTGGACTTGAGAAACCAAAACGTAAGAGAGGGAGACCTCCTAAAAAGCTCAAAACTGCTGAAGAATTGGCTCAGGAGGCAGTTGCAAAAGAAAAAGAACTGATGGCTTCAAAAAAAAGTGAGAGGGAATATGAACCCACTGGCAAAAGGAGAAGAAAAACTCCAACAAGATTCAGAGAAGCTGTGCAGGGTAAAGAGCttgaaagaatatttaaagaagAAGGTGTGATCGATGGAGATGAAAGTGACCGTGATATAAAACCACACcaagaaataaatgttaaagttaCTGCGCCAAAAGAGCCTGAAATTATTGGACATATGGAAAACTCTGGTGAACTGGTGGTCTTTGTTAAGGGTAAGGGACGCGGTAGACCAAAAGGCCCAATGTGTCTGACTCGCAAAGAGTGTGCTATCTGTGACATGAAGTTCTCATGCGCTGGCCGCTACATGTCGCACGTCGCGCAGCACGGTCCTGTCATATACCAGTGTAGTCAGTGCAATGAATCTTTTGACACGCAGCTCAACTTCACTAATCATCAGAAGCAGCAATCCCATACTGGTAAAATCGTTATACCAATCAGCAAGAAAAATGCGCAAAAGAATCAGATCATTAATGTAACAGAAACATTGAAGATTGAAGCACAGTCAGATAATAGCCATCAGTCAATAACTGAAACGCCTGACGTAGGAGTGAACATGCTGATAGACAATGTGATGACGTCACTGCCAGACCTGAGCGCGCAGCCTGTCACCAGCCAGGATCTGAATATGTTGGTGAAACCTGAAAGTCCCACTATTGAGATTACTTCTAGTCCTAGTATTGATGGTGCTGTGAAAATTTCTCATACATCCTCTGATGTGGTAGAAGTAACTCCGAAGTCTGATGAAGGGGCCAAAGAGACTGCGCCGGCGGGCAAAGCAAGATTGAAGTGCAACCACTGTGATAAAACATTTAGCAATAAACAGAGCAAGTCTCTACATATTAAGgCGGCGCACCAAGGCGAGCGTCCGTACGCGTGCGCGGAGTGCGGCGCGCGCTTCGCCTACCCGCGCTCGCTGTCGTTGCACGCCGTGTCGCACCGCCGACACCGCGCCAACAACGCCAAGGAATTCGCTTGCGACCTGTGCGGGAAGGTCCTAAACCATCCGTCATCGGTGGTGTACCACAAGGAAGCGGAACACGCAGGACAACGATACGTTTGCAACAAGTGCGGCAAGTCGTTCAAACATAAACAGTTGCTGCAGCGACATCAACTTGTTCATTCTCAAGTTAGACCTTTCACTTGCAAGACATGCAACGCATCCTTCAAAACTAAGGCGAATTTACTCAACCATCAACTGTTACACACGGGTGTCAAGAAGTTCTCCTGTGAGATATGCAAGCATAAGTTTGCGCACAAGACTAGTCTCACACTGCATATGAGATGGCATACAGGTCAGAAGCCGTACTCGTGCGGCACGTGTGGCAAGAGCTTCAGCCAGAAAGGCAACCTGTCGGAGCACGAGCGCATCCACACCGGTGAGAAGCCGTTCCAGTGCGCGCTATGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGCGCGCCGCCACGCCGCTGACCGCCCGTACGCCTGCGCGCATTGCGGGAAACGGTTCGTGTCGCGCGGCGCGTGGGCGGCGCACGTGCGGCGCGAGGGCGCCCTGCGCGCGCACCGCTGCGCGACGTGCGGGCGCACGTTCGCGGAGCGCTGGCCACTGCTCAAGCACATGCGCACGCACTCGGGCGAGCGCCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAACAGATAAGCCTGCTAGCCACCTCTCAGCCGCAACAGCAGCCGACGCCACCGCCGGTGCTGATCCCGAAGACGTCGCCCGTCGACGTCAAGCTGATAGAAGAAGAGTCGCAGGAGGAAACGTTAGAGGAGCGCGTCATCTACGTCACATACGATGTGGACGAGCCCGACTCGCCTGCCTTCCATATACTGTCGCCGGAACAGGCGGCAGGTCTAGACGAGAGCAAGGTGATGACAACATGCGAGCTGTACACCGGGCCATCACTGCTGGTGCCGCAGCCGGAGCTGGAACAACTAGAGCTGGAGACCGAACAGCTGGACCAAGATCAACTGGAACATCTACAAGAACAACTGGTGTTGGACGGAAGTGAACATATGCCTGTGACTGATGAGCAAGGCAATCCACTGCATTTTACGATGCAGGATGGCACGCGTCTCGCTATTACCTCTGCGGACGGAAAATCTCTACAGGTAATCACCGAAGATGGCCAAACCATTCCTGTGGAGATCAATGGATATGCTAATGAAGAGGAAGTAGACAACCCAGACACCATCGTTCATCAGCTAAACTTACAGAAGAGCGTCGACAACGACGTGTCGGCGCCGGTCACTCATTATTTCACTatcgtttaa
- Protein Sequence
- MEVYLYNSTVCRLCGEENDNGTLLYSGEENNPNLSEVINTYLPIKVYDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREREYKKTILNPAPEQDVITEKIVYEVNTSNGVYQVEHPIALQVAGLEKPKRKRGRPPKKLKTAEELAQEAVAKEKELMASKKSEREYEPTGKRRRKTPTRFREAVQGKELERIFKEEGVIDGDESDRDIKPHQEINVKVTAPKEPEIIGHMENSGELVVFVKGKGRGRPKGPMCLTRKECAICDMKFSCAGRYMSHVAQHGPVIYQCSQCNESFDTQLNFTNHQKQQSHTGKIVIPISKKNAQKNQIINVTETLKIEAQSDNSHQSITETPDVGVNMLIDNVMTSLPDLSAQPVTSQDLNMLVKPESPTIEITSSPSIDGAVKISHTSSDVVEVTPKSDEGAKETAPAGKARLKCNHCDKTFSNKQSKSLHIKAAHQGERPYACAECGARFAYPRSLSLHAVSHRRHRANNAKEFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQVRPFTCKTCNASFKTKANLLNHQLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCGTCGKSFSQKGNLSEHERIHTGEKPFQCALCPRRFTTSSQHRLHARRHAADRPYACAHCGKRFVSRGAWAAHVRREGALRAHRCATCGRTFAERWPLLKHMRTHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLATSQPQQQPTPPPVLIPKTSPVDVKLIEEESQEETLEERVIYVTYDVDEPDSPAFHILSPEQAAGLDESKVMTTCELYTGPSLLVPQPELEQLELETEQLDQDQLEHLQEQLVLDGSEHMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITEDGQTIPVEINGYANEEEVDNPDTIVHQLNLQKSVDNDVSAPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502325;
- 90% Identity
- -
- 80% Identity
- -