Tjac002620.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- PAXBP1
- Assembly
- GCA_947561695.1
- Location
- OX387208.1:21146989-21162699[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.49 6.3e+03 -3.0 0.0 216 239 308 332 301 336 0.77 2 3 0.017 2.2e+02 1.8 0.0 173 206 491 524 483 529 0.84 3 3 3.4e-15 4.4e-11 43.4 0.1 6 190 517 680 512 689 0.70
Sequence Information
- Coding Sequence
- ATGTTTCGCAAACCGAAAAAGATTCAGCGCCGGGTGTTTTGCGCTGATGACGATGAAGATGGGGAGCCAGAGCCTCCGCCGCCACCCGTTATTAGCTATGAAAAGAAGGAACACAAAGCCGTTAAAAGTACTCCTACATTAAGCTTCGCCGACGAAGAGGAAGAAGGTGAAGTTTTCAAAGTAAAGAAGTCTTCACAGAGTAAAAGAATGGCTAAGAGAAGAGAGAAGGAAAGAGAAAAACAGAAGAGAGATGTGAGAACAGAGGGTGATGATAACAAATATGACAATAACGGCCACGAGGAAAAGAACGACCACACAGAGATCACTGAACGGAAGACCAAGAAGAAGGTTACGTTGGAGGGTCTTATACTATCTGGTCGCGAGGCACTTGCAGCAGACGGCGATGGCGATGTGACCAGTGGGGGGGAGGAGGACGAGGAAGAAGATTCTCGAGGGTTCCACAAGTACCGCGCGGAGACCGTCCGGGCCGCGCTTGCCAAGCCCGGAATACCTGACGCGGCACTCATCCACGCAGCCCGCAAGACCAGACAGCAGGCTCGCGAATTGGGTGGTGATTTCATACCGATGAAGTCTGAAACTGCTCCTGGCTCGAGGCTGGTTCGAGACGATGGCTCTGGTGATGATGAAGAGGAAGATGGCAGAATACTCGTCAGAGGTCTCGAAATGCCTGATGATAAACCTAAACGTAGTACAGCGGCTGTGTCAGAAGAGGAATTGGACAGTGAAACAGAAGAGTGGGCCTCGCAGCAGTTACTAAAAGCACGGCCAGCCATCATTGACATCACTGGAGATGGCGCTATAGAGGTGAACCCGTTCTCATTGATACCGGCGGCCCCTCAGCTAGCGGCGCAGTTAGCGGCGCACCTGAGACCTCTGACTACCGACACGGCCGCCCCGCCGACCTCAGCCAATGAACTTGTTACGGCTCTACGTAAAAGATTAGAAGAGTTAAGAATAGATCGTCAAACTACCCAACAAACGCACAGAGGTCTGCGTGAACGCCTCGTGACCGCGACTAGAATGCGCGAGAGTCGTTCCGCGCGCTGTGCCGAGTTGGACGCGGCATACCGGCGGGCGCAGGCCATACGCGGTTACCTCACTGACCTTATTGAGTGTCTAGACGAGAAGATGCCACAGCTGGAAGCATTAGAGGCCCGCGCGCTGTCGTTGCACAAGCGCCGGTGCGAGTTCCTCGTGGAGCGACGCCGAGCGGACCTGCGGGACCAGGCGCAGGATGTACTCGCTCTAGCCGGTAGGGCGGGGTGCGCGAAACCCGTGGAGTGCGAGGAGAAGACCCGTCGCGCGGCGGAGCGGGAGGGGCGGAGGCGCGCGCGGCGGCTCAAGCGCGAGTCGGCCGCCGCCGCCGCCGGCGCAACCCTGCCGCACCGCGAGGGAGACTCCTCCGACGACGAGCTGCCTCCCACAGAGTTACACCACTACACACATGAGAGAGACACGATCCGTAGTGCGGCAGAGAGCCTGTTCGCGGACGCGCTGCCGGCGTGGCGCTCCGTGCGTGGCGTGTGCGGGCGCCTGGCGCGGTGGAGGGCGCGCGCCGCGCCGCTTTACGCCGACGCCTACGTCGCCGACTGCCTGCCGCGCCTGCTCGCGCCCTACGTGCGACACCAGTTGATACTATGGAATCCACTAGCAGATGAGAACAATGAAGACTACGAGAAAATGGATTGGTACAAATGTCTATTAATGTACGGCGTTCGTACCGAGAGATCGGTCGACTCTTCGGAGTCTGAGTCGGAGGGCGAGCCGGAGCCCTCGCCGGTGACAGAGCAAGCCGTCAGGGACGATCCCGACCTGCTTTTAGTGCCTACGTTAATGAGCAAAGTTGTGCTTCCTAAGTTGACAGAGCTGGTGGAGTGTGCATGGGACCCGATGTGCGTGCGCGCGTGCGTGCGCTTGCGCCAGGCCGTAGTGCGGGCGGCAGCTCTGCCGGCCAGCGCCGCGGCCCTGCGCCGCCTCGGGGTCGCCGCTAAGGCACGACTCGCCGCGGCCCTCGCGGCTGATGTGTTCCTGCCTGCTCTGCCGCCACACGTGATGGAGGGTTCGGGCGGCGTGTTCTGGCGGCGCTGCGTGGGCGCGGGCGTGCGCCTGCTGCGCGCCGCGCTCGCGCTCACGGCGCCCCCGCCCGAGCTGCACGCCGACCATCTCGTGCTCAAGCTTATAGACACTTTATGTATGGGTGCGGGCGCGGCGTCGGGCGTGTATGCGGCGACAGCGGCTGCAGCGCTGGCCGCCACGCTGCCGCGACACGGCGCACTGCGCGCTAAAGCGCTCCAGCGGCTGGCCGCGCTCGCCACCTTAGCGCTACAACGTCTCGACACCGATAATCCGCTGCATTTAAAAGGACTGGAGCAAGCGAGGGGTGTTATCGCAGCCGCTAAGGCTGCTGCCGAATAA
- Protein Sequence
- MFRKPKKIQRRVFCADDDEDGEPEPPPPPVISYEKKEHKAVKSTPTLSFADEEEEGEVFKVKKSSQSKRMAKRREKEREKQKRDVRTEGDDNKYDNNGHEEKNDHTEITERKTKKKVTLEGLILSGREALAADGDGDVTSGGEEDEEEDSRGFHKYRAETVRAALAKPGIPDAALIHAARKTRQQARELGGDFIPMKSETAPGSRLVRDDGSGDDEEEDGRILVRGLEMPDDKPKRSTAAVSEEELDSETEEWASQQLLKARPAIIDITGDGAIEVNPFSLIPAAPQLAAQLAAHLRPLTTDTAAPPTSANELVTALRKRLEELRIDRQTTQQTHRGLRERLVTATRMRESRSARCAELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALSLHKRRCEFLVERRRADLRDQAQDVLALAGRAGCAKPVECEEKTRRAAEREGRRRARRLKRESAAAAAGATLPHREGDSSDDELPPTELHHYTHERDTIRSAAESLFADALPAWRSVRGVCGRLARWRARAAPLYADAYVADCLPRLLAPYVRHQLILWNPLADENNEDYEKMDWYKCLLMYGVRTERSVDSSESESEGEPEPSPVTEQAVRDDPDLLLVPTLMSKVVLPKLTELVECAWDPMCVRACVRLRQAVVRAAALPASAAALRRLGVAAKARLAAALAADVFLPALPPHVMEGSGGVFWRRCVGAGVRLLRAALALTAPPPELHADHLVLKLIDTLCMGAGAASGVYAATAAAALAATLPRHGALRAKALQRLAALATLALQRLDTDNPLHLKGLEQARGVIAAAKAAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282411;
- 90% Identity
- -
- 80% Identity
- -