Tabs032487.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055309.1:5918519-5920608[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00019 7.3 7.9 0.1 26 48 118 140 113 145 0.90 2 7 0.039 1.5e+03 0.5 0.1 25 50 147 172 141 176 0.84 3 7 0.00013 5.1 8.4 0.2 22 50 203 231 197 235 0.85 4 7 0.00036 14 7.0 0.1 23 48 234 259 230 261 0.88 5 7 0.00028 11 7.3 0.1 25 48 294 317 289 322 0.87 6 7 0.002 76 4.6 0.4 23 48 359 385 354 386 0.84 7 7 3.4e-06 0.13 13.5 1.1 20 48 385 413 383 417 0.93
Sequence Information
- Coding Sequence
- ATGGAGGAGCTAAtacataaaaatgaaataaaattagagATAGAATGCGAATATGACAGGACTAATAATGATAGTCAATACGTTGGAGATATTCAAGAAAATAATGTTCAGCAATGTTATATTAAAACAGAACCAATAACTCACACACAAGATCTTGACTTTGTAGGCAATGAAGGACTGCCATTAAAAGTAGAAGTTAAAGTTGAAGATAGTATTACGGGACACAATCAGGATCCAGCACAAGTTTTTAAAGATGCCCGCACGGACCAGCAGCCTGCCATTGCGGGGGAAAACATAAATATGGATGATATACAAGATAAAGTATACGATAATGGTCGCAAGAACAGGATAAACTGTCCAATCTGCAGAAAAGACTTCAAAAATCGAGCAAATTTGAAGAATCATTTGAAATTCATACATGCTTCTGATGAATCTATGGTTGAATGTAACGAATGCTTCCGCACATTCAAGTCTAAAGCTCATTTACGCACACACATATCCTCCGTGCATGTTGCTGTGAAAGAGGTGTCATGCACACAATGCGATAAAACATTTCTGAAccagaaaaagttaaagaatcACTTATTCTATGCACACCCTAAGCCTGAAGACAATATTATTTGTCCAATATGCaataaacaatacaaaagtAGCTTAAATTTAAAGATCCACATGCGACAAGTCCATCCGTCGAAGGACAGAATGGCAGCGTGCCCAGTATGTCACAAAACCTTTAAAAGTGAAATGTTGTTGCAACGTCATGTGAAATGGAGCCACCCACCAGATGGAATGACATACCGTTGTCCAGAATGTGGGCGGACCTTACCCTCCTTACAGTGCTATCAAAAGCATATCGCAAATGTCCATTTAAGTTCTGCATCACAATGCAATATATGTGGAAAATCATTCAAGACTCCAAGAAATCTTGAAAGACATGTCAGCTATGTTCACAATGGTCAAAAACCTGAGAAAAAAGCTTACAAGGTTGGGGATTTCAAATGCATGGAATGTGGCAAGATGTTTGCAACTCAAACAGCTTTAGATTGGCATGTTGATAGAATACATTTAGAAAATCAACCAGagaatatttgcaaaatatgcTGTAAAGAACTATCGGACTACCAAAGTCTGCGGAGACACATTGATACGATCCATTCTGAACAAGCAGCTGAATGTCCGGAGTGTCATAAAGAGTTTAAATCATCTATTCATTTGCAACGGCATATTAGAATCACCCACGCATCGCCAGACAAAGAAGTCACATGTGTTACTGACAGCCCCCTATGCAGAGCATGCATGGAGGAAGAAGAAACAGCTGCCCATGTGGTGATACACTGCAAAGAGGTGGCAACATACCGGGCAAAGTACCTCGGAACCCCGAGGTCGATCCCTGAGGCACTCAGTGACTTGGTAGGGTTGCTGAACTTCCTCAGGGAGCTAGGATGGCTCGAGTAG
- Protein Sequence
- MEELIHKNEIKLEIECEYDRTNNDSQYVGDIQENNVQQCYIKTEPITHTQDLDFVGNEGLPLKVEVKVEDSITGHNQDPAQVFKDARTDQQPAIAGENINMDDIQDKVYDNGRKNRINCPICRKDFKNRANLKNHLKFIHASDESMVECNECFRTFKSKAHLRTHISSVHVAVKEVSCTQCDKTFLNQKKLKNHLFYAHPKPEDNIICPICNKQYKSSLNLKIHMRQVHPSKDRMAACPVCHKTFKSEMLLQRHVKWSHPPDGMTYRCPECGRTLPSLQCYQKHIANVHLSSASQCNICGKSFKTPRNLERHVSYVHNGQKPEKKAYKVGDFKCMECGKMFATQTALDWHVDRIHLENQPENICKICCKELSDYQSLRRHIDTIHSEQAAECPECHKEFKSSIHLQRHIRITHASPDKEVTCVTDSPLCRACMEEEETAAHVVIHCKEVATYRAKYLGTPRSIPEALSDLVGLLNFLRELGWLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501396; iTF_01501375; iTF_00844602; iTF_00844620;
- 90% Identity
- iTF_01501396; iTF_01501375;
- 80% Identity
- iTF_01501396; iTF_01501375;