Tabs008216.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_029230345.1
- Location
- CM055287.1:2226045-2246360[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-82 3.8e-77 260.6 22.2 1 264 16 280 16 310 0.88 2 2 0.032 1.2e+03 -0.4 10.6 118 170 320 372 314 383 0.84
Sequence Information
- Coding Sequence
- ATGTGTTCTCACAAAAACGGAATAAGCGAGAGAAATAAACGCTTGGCGGAACAGCGGCTAGCTGCAAGGCGAGCAGCACGAGCAGAAGCGAGGGAGATCCGCATGAGGGAGCTAGAGCGACAACAGAGGGAGCAAGAGGACCATGCGGACAAGGCCTACGACATGTATGCAGATCCCCTGGTGGGCCGACGGGGTGTCAGCAGGCTGGCCTCCCTCACTGGAACCCCTGTGGGTCTCCATTCGCCGCGACGGAGCTCGGAAGACTCCGTCGATGATGGCTTTAGCATCAAGGACCTTAGGCATGAGCTTAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTGGACAATGACAAGGCTGCTCTCGGGTACCAACTCGAGCTGCTCAAAGACAGGATAGAGGAGCTTCATGAAGAATACGCACAACTCCAGCGAGAACACAAAGAGAAATGCTCAGCGCACGAACGCTTAAAACGCGAGCACGCGTCATTAGAGCGCGAACTGACAGCCGCGCGCGACGCCGTGCGCGCTCGGGACGCGGCCGTCTGCCACGCGGGGTACGCGTTCGTGGAGGCCGGCAGTGTGCAGAATGGGGGGGAGGAGGATGGGGAAGTGAGGGAGGGGTTCGGGTCGGTGCCGGCCTTGGCGCTCGTTAGTCATCAGTCGGAGCAATTGCTGCAGGATGCTGGGGAAGGGACTTTAGATGTCCGATTGCAGAAGCTGGTAGCGTCCAAGCAAAGTCTCGAGTCAGAGGTGCGCAAGCTCAAACTGCAGTTGAACGACGAGCGAGCCGCGCGGCAGAACGGGGTCGCCAACCACCATGATATCGACCGGGAGAACGAGATGGAAGCTCTCCGCAAGTCATGTGCGGAGGCCAAGGGCCGCGCGGCGCGCGCCGAGGCTGAGGCCGCCATACAAGCCGCCGCCGTCGCCAGGCTCGAGGCTCAAGTGTCGCGGCTGAAGGCTCGCCAGGACCACCAGGATGAGCATGAGGAGCAGCTGAAGCAGGAGAGGAGGAAACTGCAGAGAGAGGCGCGCGAAGCCCTGAACCGAGTGGAGGAGTTGGAGACGGAGAACAGTCACCTCACTAAACGCCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MCSHKNGISERNKRLAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYADPLVGRRGVSRLASLTGTPVGLHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELTAARDAVRARDAAVCHAGYAFVEAGSVQNGGEEDGEVREGFGSVPALALVSHQSEQLLQDAGEGTLDVRLQKLVASKQSLESEVRKLKLQLNDERAARQNGVANHHDIDRENEMEALRKSCAEAKGRAARAEAEAAIQAAAVARLEAQVSRLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01336865;
- 90% Identity
- iTF_01336865;
- 80% Identity
- -