Scos021113.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949820665.1
- Location
- OX463306.1:19987583-19992835[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-61 1.8e-56 192.9 13.0 44 297 67 322 50 325 0.83 2 2 0.34 7.4e+03 -2.8 9.6 119 170 336 387 330 398 0.73
Sequence Information
- Coding Sequence
- ATGATTCTGTTCTTAGTTTGCTTCTTCGCGGCGTTGGTCCAACGTGGCCTGAAGTTTTTAGCTGATGTCTGTTACTGGATATGCAAATACATCGGACTTTTGTGTGGCGGGCCTGAGTTTTGTAATCATCAGATAGTTTTTGGTATTAATTCTTCTGTGACTCGCGACTCACAAACCCAAACCGTCAAAACACATATTTCAGATCCCCTGGTGGGGCGAAGAGGTGTCAGTAGACTGGCCTCCCTGACAGGGACGCCTGTGGGCCTGCACTCGCCCAGAAGAAGCTCCGAAGACTCCGCCGACGATGGGTTTAGCATCAAAGACCTTAGGCATGAGCTAAAAGAGGTAGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCTTCATTAGGCTACCAGCTGGAACTGCTCAAAGACAGGATAGAGGAGTTACACGAGGAATACGCACAGCTACAGCGAGAGCACAAAGAGAAATGTTCAGCGCACGAACGCTTAAAACGCGAGCACGCATCTCTAGAGCGCGAACTAACCGCCGCGCGGGATGCCGTCAGAGCAAGAGACGCCGCGGTCTATCACGCGGGATACGCCTTTGTTGAAGCTGGGATGGTACAGAACGGGGAAAATGGAGATGAAAATGGAGTCAATGAGGAAGAGAGAGAAAGTTTCGGGTCTGTGCCGGCCTTGGCGCTGGTCAGCCATCAGTCGGAGCAGTTGTTGCAAGATGCTGGCGAAGGAACACTTGATGTCCGATTGCAGAAGCTGGTGGCGTCGAAGCAAGGGCTGGAGTCGGAGGTTCGCAAGCTGAAGCTTCAGCTGAACGACGAGCGGTCCGCGCGGCAGAACGGGGTCGCCAACCATCACGACTTGGATAGAGAGACTGAGATGGAAGCGCTCCGCAAGTCGGTAGCAGACGCGAAGGGGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGGCGCGGCGGTGGCGCGGCTGGAGGCGCAGGTGTCGCGGCTGCGCGCGGGCCAGGAGCACCAGGACGAGCGCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGCTCGCGACGCCCTCAACCGAGTGGAAGAGTTGGAGACGGAGAACAGCCACCTCACCAAGAGACTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MILFLVCFFAALVQRGLKFLADVCYWICKYIGLLCGGPEFCNHQIVFGINSSVTRDSQTQTVKTHISDPLVGRRGVSRLASLTGTPVGLHSPRRSSEDSADDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELTAARDAVRARDAAVYHAGYAFVEAGMVQNGENGDENGVNEEERESFGSVPALALVSHQSEQLLQDAGEGTLDVRLQKLVASKQGLESEVRKLKLQLNDERSARQNGVANHHDLDRETEMEALRKSVADAKGRAARAEAEAALQGAAVARLEAQVSRLRAGQEHQDEREEQLKQERRKLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501137;
- 90% Identity
- iTF_01501137;
- 80% Identity
- -