Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: RNASEK
Assembly: GCA_014905495.1
Location: BNES01000010.1:14629669-14648388[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.1e-06 0.00027 21.7 0.5 1 23 212 235 212 235 0.96

2 13 0.00016 0.015 16.2 0.2 2 23 267 289 266 289 0.95

3 13 8.9e-05 0.0079 17.1 0.2 1 23 295 317 295 317 0.97

4 13 2e-05 0.0018 19.1 2.1 1 21 323 343 323 344 0.95

5 13 1e-07 9e-06 26.3 0.5 1 23 355 377 355 377 0.98

6 13 6.8e-05 0.0061 17.4 2.2 1 23 387 409 387 409 0.98

7 13 4.7e-06 0.00042 21.1 0.3 1 23 415 437 415 437 0.98

8 13 3.5e-06 0.00031 21.5 1.5 1 23 443 465 443 465 0.99

9 13 2.4e-05 0.0021 18.8 2.6 1 23 471 493 471 493 0.95

10 13 4.3e-05 0.0038 18.1 1.9 1 23 499 522 499 522 0.94

11 13 6.3e-05 0.0056 17.5 0.8 2 23 529 550 528 550 0.95

12 13 1.2e-06 0.00011 22.9 2.7 1 23 556 578 556 578 0.99

13 13 7.2e-06 0.00064 20.5 3.1 2 23 585 607 584 607 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.1e-06	0.00027	21.7	0.5	1	23	212	235	212	235	0.96
2	13	0.00016	0.015	16.2	0.2	2	23	267	289	266	289	0.95
3	13	8.9e-05	0.0079	17.1	0.2	1	23	295	317	295	317	0.97
4	13	2e-05	0.0018	19.1	2.1	1	21	323	343	323	344	0.95
5	13	1e-07	9e-06	26.3	0.5	1	23	355	377	355	377	0.98
6	13	6.8e-05	0.0061	17.4	2.2	1	23	387	409	387	409	0.98
7	13	4.7e-06	0.00042	21.1	0.3	1	23	415	437	415	437	0.98
8	13	3.5e-06	0.00031	21.5	1.5	1	23	443	465	443	465	0.99
9	13	2.4e-05	0.0021	18.8	2.6	1	23	471	493	471	493	0.95
10	13	4.3e-05	0.0038	18.1	1.9	1	23	499	522	499	522	0.94
11	13	6.3e-05	0.0056	17.5	0.8	2	23	529	550	528	550	0.95
12	13	1.2e-06	0.00011	22.9	2.7	1	23	556	578	556	578	0.99
13	13	7.2e-06	0.00064	20.5	3.1	2	23	585	607	584	607	0.94

Sequence Information

Coding Sequence: ATGCCAGTTTGTGGACCAAAACTGTCGCTTTGCGGCTTAATTCTAAGTGTTTGGGGAATAATACAACTGACTCTGATGGGTGTTTTCTACTACATACGAGCAGTAGCTCTTGCAGAAGATGTACCTGGAATAGAAGAAGAATTCCACACACTGCAAGACTTTTATAATGCTGCTGATGCTGGTTATACTCAGGTCATGGAATCTGAAACCATTATTTTAAAGACGGAGCCTACCGAAGAGcttgaattaaatggaaatcGCACAGAGTTAAGCATCGTTCCTCTTTTACATGTTACAGATTCTGCTGTTGTGACAACATTAGAAGTAACAACTGATACAGAtgggaattttaaaataaatacgattgAACAGAACGATGTCATCAATGATGTGCAGAGAGAGATTGAACTTGAAATGGAAGCAGATGAGTTTATTGAAGAAAATAGTATACAGTATTCGATGGAGGAATCATTGgatcaagaagaagaagaagatgatgatgatgatgatgatgataacTTGAATGATATTGAAGATGAAGTAACTGGTGAAGATGAAGATCCAGATGACCCAGAGTTTGAGATTGGCAGCTatcaaaaagtaaaaactgaaaaaattgATGACGAAGAAGaatatgtttgtaatatatgtaaacGAAACTATAAAACACCTGCAAGCTTAAAAAGGCATATAACTGTATCTCATAGTGAGGAACTGAAACAAGAAGATCCTTTAGCGTTCGAGCTGTGCACTTGCTGTGGAGAGCCTGTTGATTCTGCTCATACGacGGGAGATATCAAATGTGGAAAGTGCGATAAACTTTTTGTTCTACAAAGTAATTTAGATCGCCACATAAGTATTGAGCATAATGAAAACGATTTCTATCAGTGTGTAGAATGTAGTCATACGTTTGCTACGAAAGATGGCCTAGTAGAACATATGGGCATACATCCACTATCTAAACCATATTCATGCAAAGTATGTAATAAAGACTTTACTAGAAGATATCATCTCGATAGACATCTTATGCAAACTGGTTGTGATGGACCGCCGAAGAATGCCTTTAAATGTCAGGTTTgcgaaaaagtatttgcacgTAAGGATAATCTGAGGGTGCATTTAAGAGCGCATGCtggtgaaataaaaaagaaaaaaattttctcGTGTACTTACTGTAATAAGGATTTTCAAGGACATGCCTTATTATCTGTGCATATGCGAACCCATACAGGTGAACGACCATATCCATGTGATCTTTGTCCGAAAAGATTTCCGTCAAGTGGTGCTATGAGAAAACATAGAAGAATGCACACGGGTGAAAAACCATACGAATGTAACACATGCAAAAAACGTTTTGCCGCAAAAGAAACTTTGAATAGACACGTGCGTACTCACACTGGGGATAAACCTCACTCCTGTCAATTTTGTGGAAAAAGTTTTATACAAGCAGCACAACTCCGAGCACATATTTTCCATCACACTGGGGAAAACGCATTCACTTGTCCACACTGCAACAGAGCTTTCAATAGACGAGTCCGTTTGACCACACACATCTTATTTGTTCACGAAGGTGCTCAACCTatgcaatgtgatttctgcgaAAAGAACTTCTACAGAAAAGAAGATTTACAAAGACACGCTTTGCTACACAGTGGTGTAAAACCATTTAAATGCGAAGTATGCAGTAAATGTTTTGCTGTGAAATCTTCTCTAAAATTGCACATGCTCACTCATCGCAAAGAACCTCCATGTAGTTGTGATGAATGCGGAAGAGCATTTATCAGACAGGATTGTCTGCTCAGACATATGAGAGCGAAACATAGAGATGTTTTGGAAGACATCATGGCTAGTGCAGAGAAAAAACGTTTGCAGCAGCAACTTTTAAGCGTCGCTCAAGATGTTGCTGCCGGCAATAAATTTACCGAGCAGCAGAACGGCATATGGAATGAAATAACATTAACTGATTCTATTAAAGAACTATTGACATTGTTAGTCGATGAAACGACCTTAAAAGCGTTTGGTTGGCCTGATACTCCAGTCGACAAAATGTTGGATGCCGTTATAAAACGATGCGGACATCAACCTGCATCCGATGAAGATTTTGATTACATAGGGCGAATGCgagaaaatgcaaaattgttaTTCACAGTTGTTATAGATGATGACGCTATAAAAGCCCTTTTAAACAATCAAACTGTTGACGAAGTCATCCTCCATGTTTTGAGACTTGCTAAAAATGAATAA
Protein Sequence: MPVCGPKLSLCGLILSVWGIIQLTLMGVFYYIRAVALAEDVPGIEEEFHTLQDFYNAADAGYTQVMESETIILKTEPTEELELNGNRTELSIVPLLHVTDSAVVTTLEVTTDTDGNFKINTIEQNDVINDVQREIELEMEADEFIEENSIQYSMEESLDQEEEEDDDDDDDDNLNDIEDEVTGEDEDPDDPEFEIGSYQKVKTEKIDDEEEYVCNICKRNYKTPASLKRHITVSHSEELKQEDPLAFELCTCCGEPVDSAHTTGDIKCGKCDKLFVLQSNLDRHISIEHNENDFYQCVECSHTFATKDGLVEHMGIHPLSKPYSCKVCNKDFTRRYHLDRHLMQTGCDGPPKNAFKCQVCEKVFARKDNLRVHLRAHAGEIKKKKIFSCTYCNKDFQGHALLSVHMRTHTGERPYPCDLCPKRFPSSGAMRKHRRMHTGEKPYECNTCKKRFAAKETLNRHVRTHTGDKPHSCQFCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTTHILFVHEGAQPMQCDFCEKNFYRKEDLQRHALLHSGVKPFKCEVCSKCFAVKSSLKLHMLTHRKEPPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDIMASAEKKRLQQQLLSVAQDVAAGNKFTEQQNGIWNEITLTDSIKELLTLLVDETTLKAFGWPDTPVDKMLDAVIKRCGHQPASDEDFDYIGRMRENAKLLFTVVIDDDAIKALLNNQTVDEVILHVLRLAKNE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01123946;
90% Identity: iTF_00626386;
80% Identity: -