Tdic004215.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- bab1_1
- Assembly
- GCA_014905495.1
- Location
- BNES01000012.1:5850553-5898587[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 7.4e-08 32.4 0.0 1 39 384 423 384 427 0.90 2 4 4.3e-13 8.8e-10 38.6 0.2 1 39 438 476 438 479 0.95 3 4 3.2e-19 6.7e-16 58.2 0.0 1 45 493 538 493 538 0.98 4 4 8.1e-17 1.7e-13 50.5 0.0 1 40 545 585 545 589 0.92
Sequence Information
- Coding Sequence
- ATGTCTAGTCAGCATTACTGCCTTCGATGGAACAATTATCAAAGCAATATGACCACAGTATTTCATCAACTTCTACAAAATGAAGCGTTTGTCGATGTCACACTAGCATGCAATGATTTGTCATTAAAGGCTCATAAGGTAGTTCTGTCTGCATGCTCTTCTTACTTTCAAAAACTTCTCCTGGAGAATCCATGTAAGCATCCCACGATAATAATGCCACAAGACATCTGCTACGCCGATCTGAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCCCAAGCAGAATTGCAGTCTCTACTGAAAACGGCAGATCAACTGAAAATAAAAGGCCTTTGTGAATCACCGGAAGAAAAGGAGAAATCAGATCAACTACCGGATTTTACATTTGGAGGACGGGGCTATTCGAAACTTCGTAAATTATCTTCACCTAAACAGTTCAAATCGACAGAGAATAACAGAAAACATAAGTACAGGAAACCCGAGCGAAGACGATCGCCAGACCAagagaataaagaaaacaaagacgCCACTTCGGCAAATCATTCGTCAGATGAAGAAAATGACATGCCAGTAGCTCTAGACGAAGAAAGTCGGAAAAGAAAATTGAGTGAAACCACAACCAAACCAATTAACATGACTAGTCATGGACCGCTGGCAGAACAGTTCGGTGTGGATAACGATGATTTTCCACCAGAACCACCAGCACCAACAGCCATTCCCGTAGGAAATATAGAAATGCACGATCATTCACCTACCAGAACGTTACTGACAAATTCTTCAATACATCGGACAGATTTATCAGCTTTACCGCATTTACTCCTTCTAGATTCGCACAAATTTACCACagacataaaaaaagaaatcgacaTAAAGTTCGAAACGTTGCGATCATACGATGGAGAACAATCGATTCTTGACATGGAAGCCACTCGCATGTCTGGCGCAGATCACTCTATGGACAGTCACGACGATAACGAACAAGGAATGCATACGATGATGATAACCCCTGATATGATGGGTATCATGCCTGGCTCAGGTCCACACACTTTAGattCTAATTGTGGGGACTTATCTTTGAAAAGTAATGGTCATACCGAGCACAACGCAGGTAGACATGGAGGTGGGCCCAAGACGTGGACCCAGGAAGATATGGAATTAGCACTAGATGCCTTAAAAAATCACAACATGAGTTTAACAAAGgcCTCCGCGACTTATGGTATACCTTCCACTACTTTGTGGCAAAGAGCTCACAGGCTAGGTATAGATACGCCTAAAAAGGAGGGACCTACCAAGTCTTGGACGGAGGAAAGTTTAAATTCTGCACTGGAAGCACTAAGAACAGGGACAATATCTGCCAATAAAGCTAGTAAAGCTTATGGTATACCTAGCAGTACCTTATATAAAATAGCAAGGCGAGAAGGCATTCGCCTAGCTGCGCCGTTTAATGCAGCGCCTACAACGTGGACACCAGAGGACCTAGAAAAAGCTTTAGAATCGATTAGATCCGGCCAAACCTCAGTACAAAAGGCGTCGACGGAGTTTGGAATACCTACGGGTACGCTTTATGGCAGGTGTAAGCGCGAAGGCATCGAACTCTCCAGATCAAACCCTACGCCTTGGTCAGAAGATGCGATGGGCGAAGCTTTAGAGGCAGTCAGGTTGGGTCACATGTCCATCAACCAAGCTGCAATACACTACAATCTGCCGTATTCCTCTTTGTACGGAAGGTTTAAACGAGGTATAAAATATGAAACTGAAAATTTGGATACGAACTCAGACAGTCAGTCACATTTAGATGCTCAAGTTCACATGATGGACTACTCGACGAATTCACATCAGCAAATTAACTACCAACAACATCCGCCGAATAGCTGA
- Protein Sequence
- MSSQHYCLRWNNYQSNMTTVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDICYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESPEEKEKSDQLPDFTFGGRGYSKLRKLSSPKQFKSTENNRKHKYRKPERRRSPDQENKENKDATSANHSSDEENDMPVALDEESRKRKLSETTTKPINMTSHGPLAEQFGVDNDDFPPEPPAPTAIPVGNIEMHDHSPTRTLLTNSSIHRTDLSALPHLLLLDSHKFTTDIKKEIDIKFETLRSYDGEQSILDMEATRMSGADHSMDSHDDNEQGMHTMMITPDMMGIMPGSGPHTLDSNCGDLSLKSNGHTEHNAGRHGGGPKTWTQEDMELALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETENLDTNSDSQSHLDAQVHMMDYSTNSHQQINYQQHPPNS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00433957;
- 80% Identity
- iTF_01498999;