Tlin022953.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949699805.1
- Location
- OX453048.1:1071334-1087533[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-17 1.8e-13 50.7 0.2 6 69 545 608 540 616 0.90 2 2 3.3 1.7e+04 -3.7 0.0 29 44 769 784 761 784 0.72
Sequence Information
- Coding Sequence
- ATGAAGCGACGGCGAATACCGCGGTCGCGTGCTAGCAAAGTACTGCCCCCGGGGCCGATGGGAATGGCGCGCAAATGCTGCGTAAAGAATTGCGATAGCGACGGTCAGGAAGTTCGCTTCAAGGGCCTGCCCTTGCACAAATTTCCAAAAGACGCCGGATTAAGGAGCAAGTGGCTCGTAAACGGTGCGTTCGAAAGCAACTTCAAACCCACGCCCGGTCAATTTGTCTGCCACAGACACTTTAAAAGAGCCGACTACGAAACTATAAAGGGACACAAATATATTCTACGTAAAGGCTCGATACCCACTGTTTTCGCTGATTATGACAATCATCCAGATCCATTAACGATGCCAGTAAAAACAAACACTTCGTATCCTCAGGAGGACCTGGATTTGATTAATTCAGAAATATTGAACATGGATAGCGCAGCAGCAGAGTCTCCGATGTTTGCGGAGGCACGTACTCCAAAATCGGATAGTTGTGGAGAAGCCTGCAATTCCAGGCCAGGATCCTCTGCAGATTCTTTCAATCCATTTGAAAATTCCGACGTAACAGATTCCGGATGCAAAGAGATTGAGGATACAGCAATATCGATGGATCCTGCTCCAGAAAAGCAGCAGCAACGAGCCGAATTACCTGTTACTGAGTATACAGCTGTGGACGAAGGCCAGACTGGGAAAGATGATCCACCAAACGACTCGAATATCACCAAGGAAGATCTCGAAGGGGTCAAGACGGTGGAGGATAAACCATTGGAAAAAGTAGCGGAACCTGTGCCAGCGAAGCCCGTGAGCCGCGGATCTTTGAAGTTTTTTGCCGGCGCCAAATTGGAAGCAAAAGATTTCAATGATAAATGGTATTCGGCACGAGTGGTCGAAACGGACTGGGTCGATAGAGAAGTGTTGATACATTTTGACAAGTGGAGCTCCAGATTCGATGAATGGATACCTATGGACAGTTCTAGACTGAGAGTACTCCAAATGCAGCCCAGTGATCAAGTTTGGGTACTTCCGACTCCGGAAACGAAGATGAGGGATTTCTCCGTCGGGGAGAGAATTCTGGCTACGTGGGCCGATGGAAGAAAATATCCAGCCAAAGTGAACGCTGTGTTGGGAAACGACAGATACGACGTCCTTTTCGACGATGGATACGCAAAGATCGTCAGGTCttcgaaaatgacaaaaatcgcGTCTACCACGGAAAAGAAAGCCATGGAAGGTGATTCTTACATAGGAAGTAAACAGGAGAGGAGGGACAAAAAACGCAAACATACAGTGATGGAGCTCTTTCAGACTCATCCGAGAAAGCGTAACAAACCAGAGGCAGACAAATCCCTTAAAAAAGAAGATATCAGTGTTGGTGAAGATGCTAATAACTGTCATTTAGACAGCAGTACAGAACTGGACAGTTCTGGTCTTGGAACTTATTATGACTCTGGTGCAGAAGTATTAAGAGGCTTTGAGACAGCTAAGCCAAAAATGAAAacttacacaaaaaaattgaagcgcGATATGCACAGAAATGACACAGATCAAGAGGATGATGTTGGTCCTGAGTGGATCGATGGTGAACCTCAGGGAATCGAAACCTTCATTGTGGATGGAAATGATGGATCGCGACGTTCAATTATCGTGGCGGACCGGAGATTACCACCTATTTGGCAAAAACATTTTACCCAACGAAAGGCCGGAACATCTGCTGGAAAGTGGGACGTTCTTTTTGTCCATAAGCCCAGTGGCAAAAAGTTCCGATCCCGAAATGATATTCGAGCGTTTATGGAGAGTCAGGGTCAATTTGACTTCGATCCCGAGATGTTCGACTTCTGCATTCATCGCCGCAAGAGCAAAAACTCGATCTCCAGGCTAAAGTCCGAGGCTTCGGGAGAAACGCCAAAGAAGATCAAAACGTTATTTCCAAAGACGAAAGCGATACCGTTGACGCCGGAAAATTCGTTGCTGATGCCGCCAATTACGCCGGAAGGATCGATACCGATAACACCGACGTCAACGGCCTCCGAGGATGGtgCGGTGTTCATCGGTGGTCTTCGTGTAGAAATGGAGGATAGCGCGTACAAGTGCCCGAAAGAAGGATGTTGCAAGAATTTCCGGAAGGAGAATCTCCTCCAGATGCACATCAAGCACTATCATCCCGAATACTCCAAGTTCTTGGGTTCCACACCTAATGTAGCGGATTTGGCTTACGCACGTACGATCGGAGAGTCGATAGTCGACATAACGCCCAAAAAGTCGAGTAATCATTATCTGGAGAAGATAAGCAAGTTCGAGAAGCGAAAAGCTGCGCACGAAAAGCCGTCTGCAGCTTTGATTTCGCCTTCGGGGCAGTCAATTTCTTTGCTCGCGACTTCTCCGCTGCCGACTATCAATTCTGGCGCAGAAATCGTTGCACACGATAAGCTGATAGGTCTTCCGCTGCGCGACGACTCTAAATTTGAGCTTATGTCGCCAATCTCAAGCGCGAGCATGGACATGGAGGAAGAATTAGAGAAAAAAGCTGATGCGAGTTGTGCAATGTCGCCTGGTGCTCTTTTTGACCTCAAGATTCGCGAAGAAAAAACTCAAGGCGGAATTAAGACTCTTTTACCGGTCAGACCAACACCACCGACCACCGATTCGTCCAGGCTCGATACATCGAAGTCACTCGACGAGGGTAATCATTCGGACAAAGGAAAAAATTACCGGAAGCGGCAGCTTTCCGAATACACCACCGAGTTCACGAGATGTAAGGGAAGACAAGGCATGCAGGAGCTTACGGATGATTATGGGGATTTAGATGACAGTGCATTGGATGCGGAGGGTCCAGCTGGCCTCATGTATAGATTCAGTCGTAGGAAATCGGACGCAAAGAGTGACGAGAACAGCCAAAGCAGTCAGCTAAACGATTCTCGTCTTGAAAAAGCCGATACCCCGAAAGGGGATGCTGCTAAAAGTGATATTAGTAACGAAgGTAACGGCGTTATGGTGATGATCAACGGCGAGATGATCAAACTTGAGCAACTACGAcgggaagaaataataaattgtacctGCGGCTTCGTGGAGGAAGACGGTCTTATGATCCAGTGTGATCTTTGCCTCTGTTGGCAGCACGGACATTGCAACGCTCTCGAGAGGGAAAAAGACGTACCGGATAAATACATTTGTTATGTTTGTCGACACCCTTACCGTCAGCGTCCCTCGATGAAATATCTGCACGATCAGGAATGTATAAAATCTGGAAAGCTGCCGAGTTTGACGGAGCGTACCAAAGATGAAACTGTAATCAACCAAAGGACCGCAATGCTAAAGCGAACGTACGATTTGGTAGCGGCGTTATTACAGATTCAGGAGATTCTTCACAGCCTTCGTGTCAAAATCAACGTAGCTCAGCAAAAAGATCATCCTAAGCTCTATTTGTGGGCCAAGAATTGGGAAAAGTCGGAAGTCCCCGAACCTATCGTCGAACCAGTGCCAGTGATGCGATTGGTCAAGCCAAAAGTTAAAGAGCCTGAAATTGGAGTAAACGAAGCCGTTGTACCCAAGATGGAAACCGCTGCTGTACTCAAAGAAGATCTTGATGAAAAGTCAATTGCTTCCGATTCGGAACTGatgaaaattctcgaagaggATAGCACACCCTCGGACGAATCTAaaggaaattgcaagaaacaaGAGCCGGCGAACCAAACGGGCGATCATATTCTCTTGGAAGCTTTGACAAAGAATGAGCATTCCAATCAGATGCAAAATCCTACATCTACAATAGAAGTGAAGAACGAAAATGGCGAGCCGACCAACGATGCCTCAACGGTAAAACCAACGTCAACCGACGCCGAAACCCCCGGGACAGTGACCCCAGCTGAATCTATTCCCTCAGTGCCACGCCAAGAACCCGTTGCTCCTTTACAGCCCTTCATACCGGAGCCTGAAGCGCCAATCGATCCCGCAGAGTGTCGACAACGGCTTTTGGAGCACATAGatcattttcaaaatcatattgacTCGAGATTGACCACGATTGAGGCTCAAGTCGATGTATTGGAAACAATGGATCCCGACGAAGGACTGTTACAGTCTTCGGACGTACAACGTCGAACAAAGCAAACCGTGCAGATGCTCCTCCGGGATTTGAGTACAGTCCGAAAATTGGCTGCTCTTTGCTGA
- Protein Sequence
- MKRRRIPRSRASKVLPPGPMGMARKCCVKNCDSDGQEVRFKGLPLHKFPKDAGLRSKWLVNGAFESNFKPTPGQFVCHRHFKRADYETIKGHKYILRKGSIPTVFADYDNHPDPLTMPVKTNTSYPQEDLDLINSEILNMDSAAAESPMFAEARTPKSDSCGEACNSRPGSSADSFNPFENSDVTDSGCKEIEDTAISMDPAPEKQQQRAELPVTEYTAVDEGQTGKDDPPNDSNITKEDLEGVKTVEDKPLEKVAEPVPAKPVSRGSLKFFAGAKLEAKDFNDKWYSARVVETDWVDREVLIHFDKWSSRFDEWIPMDSSRLRVLQMQPSDQVWVLPTPETKMRDFSVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYAKIVRSSKMTKIASTTEKKAMEGDSYIGSKQERRDKKRKHTVMELFQTHPRKRNKPEADKSLKKEDISVGEDANNCHLDSSTELDSSGLGTYYDSGAEVLRGFETAKPKMKTYTKKLKRDMHRNDTDQEDDVGPEWIDGEPQGIETFIVDGNDGSRRSIIVADRRLPPIWQKHFTQRKAGTSAGKWDVLFVHKPSGKKFRSRNDIRAFMESQGQFDFDPEMFDFCIHRRKSKNSISRLKSEASGETPKKIKTLFPKTKAIPLTPENSLLMPPITPEGSIPITPTSTASEDGAVFIGGLRVEMEDSAYKCPKEGCCKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIVDITPKKSSNHYLEKISKFEKRKAAHEKPSAALISPSGQSISLLATSPLPTINSGAEIVAHDKLIGLPLRDDSKFELMSPISSASMDMEEELEKKADASCAMSPGALFDLKIREEKTQGGIKTLLPVRPTPPTTDSSRLDTSKSLDEGNHSDKGKNYRKRQLSEYTTEFTRCKGRQGMQELTDDYGDLDDSALDAEGPAGLMYRFSRRKSDAKSDENSQSSQLNDSRLEKADTPKGDAAKSDISNEGNGVMVMINGEMIKLEQLRREEIINCTCGFVEEDGLMIQCDLCLCWQHGHCNALEREKDVPDKYICYVCRHPYRQRPSMKYLHDQECIKSGKLPSLTERTKDETVINQRTAMLKRTYDLVAALLQIQEILHSLRVKINVAQQKDHPKLYLWAKNWEKSEVPEPIVEPVPVMRLVKPKVKEPEIGVNEAVVPKMETAAVLKEDLDEKSIASDSELMKILEEDSTPSDESKGNCKKQEPANQTGDHILLEALTKNEHSNQMQNPTSTIEVKNENGEPTNDASTVKPTSTDAETPGTVTPAESIPSVPRQEPVAPLQPFIPEPEAPIDPAECRQRLLEHIDHFQNHIDSRLTTIEAQVDVLETMDPDEGLLQSSDVQRRTKQTVQMLLRDLSTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00652717;
- 90% Identity
- iTF_01497476;
- 80% Identity
- iTF_01497476;