Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453046.1:4895167-4902599[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-12 2e-09 37.8 0.0 1 39 319 358 319 362 0.90

2 4 5.8e-12 6.1e-09 36.2 0.1 2 39 374 411 373 414 0.94

3 4 2.1e-18 2.2e-15 56.9 0.0 2 45 429 473 428 473 0.97

4 4 2.5e-18 2.6e-15 56.6 0.0 1 42 480 522 480 523 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-12	2e-09	37.8	0.0	1	39	319	358	319	362	0.90
2	4	5.8e-12	6.1e-09	36.2	0.1	2	39	374	411	373	414	0.94
3	4	2.1e-18	2.2e-15	56.9	0.0	2	45	429	473	428	473	0.97
4	4	2.5e-18	2.6e-15	56.6	0.0	1	42	480	522	480	523	0.97

Sequence Information

Coding Sequence: ATGCCGCCTGACTCGTTGTTGAGCAGCGACGAGAGAGACGGAATCACGACAGAACGAGCTAGTTTCGGTTGTGGTGGGGATGGTACGATACGGGGTCGTGGGGAGCGTCGGGAGTCTTCCCCATTCTTTCAACAAGAGtcctTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTCTGCGAGGTCCCGGAGAGCAGAGAAGGACCGCCCTCAGTGAGTTTAAGCTCACCACCGCCCCGGGAGTCCGGCACTACGAGGCTCAACTATACGAAACTGAAGAGGCATCATCCGCGATACAAGAGGCAGCGAACGACTTTCGAGCCGAGAGCCACGAGTACGGATTCACGTCACTACGACAAGTACAAAGAGGAGGAGCACAACATCGAGGGCCTCGGCCGCGACAACAACAAAGAGAACCACAGAGGTGACTGGCAGACGGAGGATGAGGAGTGCGGCGCGGAGGCAGCATCAGTAGTCCTGGAATCCTGCCAGCGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCATCCGGATCCTGGAGAGGTCGATCTGCCCCCCGAAACACAACCTACACCACCAAGTGCAACGCTAGTCGGCACGACGATAACACATCTTCGCGACACTGACCATCATTCGACCGACATTCAAAACTGCGACAGCGTAAAGATCAAATTTGAGACCCTCCACACGATGGATTCGTCGGATACGATCGATATCGACAGCCACATGTCGGATCGGGCGAGCGTTAGTTCAAAACATGCCGCCGAAAACGACAACATGATGATGATAACACCGGAACTCTTGGGCCTCATGCCTTCCGGAAGCTCGGTCCACTCGGATTCCGGAGAAAATAATTCAAGAGGCGGAGGTTCGGGCTCGCATCATCATGGATCTAAGTCGTGGACGCAGGAAGACATGGATGCAGCACTCGAGGCTCTGAGAAATCACGATATGAGCCTCACGAAAGCGTCGGCGACCTTTGGAATTCCCTCGACAACACTTTGGCAGCGAGCTCACAGACTGGGTATTGATACGCCAAAGAAAGACGGTCCAACGAAATCATGGAGCGACGAGAGTCTCAACAACGCACTCGAGGCTCTGAGAACCGGCACGATATCCGCGAACAAAGCGTCCAAAGCTTTCGGCATACCGTCTAGTACGCTGTACAAAATCGCGAGGCGGGAAGGAATAAGGCTCGCAGCACCTTTCAACGCTAGTCCGACAACCTGGTCGCCGGCCGATCTAGATAGAGCTCTCGAAGCTATCAGATCCGGTCAGACATCGGTGCAGAGAGCTTCCACGGAATTTGGAATTCCCACGGGCACTTTGTATGGCAGATGCAAGAGAGAAGGCATCGAGTTGAGCAGAAGCAATCCTACACCATGGAGCGAGGACGCGATGACAGAAGCACTCGAGGCTGTCAGGTTGGGTCACATGAGCATAAATCAAGCAGCTATTCACTACAATCTCCCTTACTCGTCGCTTTATGGCCGTTTCAAGAGGGGAAAGTACGAGGATCCTGTGGTCAGCGAGATGTCGCAAGACGGCAGCAATCCGCACTTCCATCCGCACCAGAGTCCGCATCAGAATCACTCGTCCTCCCTCCCCGATCAAATGCCTTATCAGGGTAGCTGA
Protein Sequence: MPPDSLLSSDERDGITTERASFGCGGDGTIRGRGERRESSPFFQQESLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRESGTTRLNYTKLKRHHPRYKRQRTTFEPRATSTDSRHYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGAEAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAAENDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHPHQSPHQNHSSSLPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00306165;
90% Identity: iTF_01560354;
80% Identity: -