Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01050821.1:8112-10655[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.36 36 5.7 7.2 1 23 284 307 284 307 0.91

2 10 4.5 4.6e+02 2.2 0.4 5 23 316 334 315 334 0.94

3 10 1.4e-05 0.0014 19.6 4.4 1 23 340 362 340 362 0.98

4 10 0.0013 0.14 13.3 6.2 1 23 370 392 370 392 0.98

5 10 7.4e-06 0.00076 20.4 0.2 2 23 402 424 401 424 0.95

6 10 0.00021 0.021 15.8 1.0 1 23 430 452 430 452 0.98

7 10 5.6e-06 0.00057 20.8 0.3 2 23 459 480 458 480 0.96

8 10 0.00013 0.013 16.5 1.0 1 23 485 507 485 507 0.98

9 10 5.7e-06 0.00058 20.8 1.5 1 23 513 535 513 535 0.96

10 10 0.021 2.1 9.5 2.8 1 23 541 564 541 564 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.36	36	5.7	7.2	1	23	284	307	284	307	0.91
2	10	4.5	4.6e+02	2.2	0.4	5	23	316	334	315	334	0.94
3	10	1.4e-05	0.0014	19.6	4.4	1	23	340	362	340	362	0.98
4	10	0.0013	0.14	13.3	6.2	1	23	370	392	370	392	0.98
5	10	7.4e-06	0.00076	20.4	0.2	2	23	402	424	401	424	0.95
6	10	0.00021	0.021	15.8	1.0	1	23	430	452	430	452	0.98
7	10	5.6e-06	0.00057	20.8	0.3	2	23	459	480	458	480	0.96
8	10	0.00013	0.013	16.5	1.0	1	23	485	507	485	507	0.98
9	10	5.7e-06	0.00058	20.8	1.5	1	23	513	535	513	535	0.96
10	10	0.021	2.1	9.5	2.8	1	23	541	564	541	564	0.96

Sequence Information

Coding Sequence: ATGAATCAGAGCATCGTAAGCAATCTTTGTCGCTTCTGCGCCACTCGAGAGATAAATACGGATTTAGCGGAGAAAGATGCTTCAACCAAGAAGAATATAATAACGTTGGCGacgaaacatttgaaaatcagGATCAATGATAAGCAGCCTCTGCCGCAGAAGTTTTGTACCGATTGTATTCAACAATTGGAGACCTTTGACACGTTCAGCAAAAAATGCCATACGGTTCAAGATTTATTGAAAGCTTTATCAGGAGGAGCTCCTTTGACCGAAGATCATAAACAACTGTTACCAAACGATTTGCTGGAAAAAGTGGAATTTGCACCGGTGCCCGTTGAAACTACTGTCGCCTTCGCTCCTTCTGATTTGAGCAACAATGACGACGATTTTGAATACACCGATGATCCGGATTACAACGACGATCCACCTTACAATGAGGATCCACTTTATAACGACGACGATTACGAGGACGACGAAACACCTCTCGCCGTACGAGCGAAAAGAAGAGCTAAATCGTCACCTTCTGAGCCGAAACGTAAACGAGGCAGACCTAGGAAGGATTCGCCAAAAGTGCCTCCAATCCGGATCAAGGCGGTtaagtcgaaaaaatcgaCGTCTTCTGTTGATATGCCTTCGACCAGTGAAAGTAACAACACGCAGTATGAGATACGTGAAGATGGTACCGAAGATCCATTGGCCATAGTTCCTCATGAAAAGAAGCCTGATCAGCCTTTGATAAACGACGACGATGATAACTTTGATTATAAGGATGATGATGATTTGTTCGCCGATGATGACTCCAAGGATCCTGAAAAAGCTTCGAAAAAGAATCCGTTTGCGTTATTCGAGTTTAAATGTCATACGTGCCAAGAAATATTCAAGAATTTCagtattttgaaaaggcaTTGTAAAAAGGAGCATAGTACGTCGGCGTACGTGAATTGTGTCTGTGGGAAACAACTTCGTGCCAGAACAGCCATCATCGAACATCGCAGAAAACACACAGGAACTTCACTTtacaaATGCGATACCTGCAACAAGACGTTTAATCGTCGGTCGTTAATGTGTCTGCATATGATAAGCCATATGCCTAAAGATGAACAACCTTACGTTTGTTGTAAATGTGCCAAACGATTCCACACGTCGTCGTTGTTGAAGAAACATGAGAAAGTTCACTTACCAGAAGAAGAACGATTTTTGGATGTTTGTAATATTTGCCAGAAAAAGTTTACGAGCAAGTCTGCGGTGAATGCCCATTTGCGAGCGGTGCATTACGGTGAGAAACCATTCGTCTGCGAACACTGCGGTAATAGTTTTAGTTCGAAAGCAATATTGACCGACCATCTGACTACTCATTCGTCTTATGCTCCTTGGCCATGTAACGTCTGTGGCAGAAATTTCAAATCCAAGTACAGATTAAATGTACATATGGATATGCACAGAAGTGTCAAATACAGATGTCCTCATTGTCCTATGGAATTATCTACACGACGTACCCTTCGTATGCACTTACTCGTgcacaaagaagaaaaagcttACGTGTGTAAAGTATGCTCGAAAGCATTTAGAAGGTCTAAGGATCTAAAGAACCACAGCAACCTTCACACAGGTCGTCGCCCATACCGATGCGAATTTTGCGAACGAACCTTCGCCAACGGTAGCAACTGCAGAGCCCACAAACTACGCATGCATCCCGAAGAACTAGGCGTTGAGAAGAACAACCGCACGTCATCCAAATCGAAGCAAACAAGTAACCTGAATATGGCAGCTGCAGCCACCGAAGCGGCCAACAAACTTAAAAATCTAACCACCTTGACGGACGTTGTTAAAAGTACACCTCTCGAGTATATGAAATACGAAAACAAATACGAATTCCCTACAAGTAGTCAGGATCTAGATTATACGTTAGATTATGCCCGCTACCCGActccttaa
Protein Sequence: MNQSIVSNLCRFCATREINTDLAEKDASTKKNIITLATKHLKIRINDKQPLPQKFCTDCIQQLETFDTFSKKCHTVQDLLKALSGGAPLTEDHKQLLPNDLLEKVEFAPVPVETTVAFAPSDLSNNDDDFEYTDDPDYNDDPPYNEDPLYNDDDYEDDETPLAVRAKRRAKSSPSEPKRKRGRPRKDSPKVPPIRIKAVKSKKSTSSVDMPSTSESNNTQYEIREDGTEDPLAIVPHEKKPDQPLINDDDDNFDYKDDDDLFADDDSKDPEKASKKNPFALFEFKCHTCQEIFKNFSILKRHCKKEHSTSAYVNCVCGKQLRARTAIIEHRRKHTGTSLYKCDTCNKTFNRRSLMCLHMISHMPKDEQPYVCCKCAKRFHTSSLLKKHEKVHLPEEERFLDVCNICQKKFTSKSAVNAHLRAVHYGEKPFVCEHCGNSFSSKAILTDHLTTHSSYAPWPCNVCGRNFKSKYRLNVHMDMHRSVKYRCPHCPMELSTRRTLRMHLLVHKEEKAYVCKVCSKAFRRSKDLKNHSNLHTGRRPYRCEFCERTFANGSNCRAHKLRMHPEELGVEKNNRTSSKSKQTSNLNMAAAATEAANKLKNLTTLTDVVKSTPLEYMKYENKYEFPTSSQDLDYTLDYARYPTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00725799; iTF_01263876; iTF_01472656; iTF_01150692; iTF_00194663;
90% Identity: iTF_00194663;
80% Identity: -