Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01031216.1:938-3606[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.2 16 6.4 6.8 1 23 280 303 280 303 0.91

2 10 4.7 3.7e+02 2.1 0.4 5 23 312 330 311 330 0.94

3 10 1.4e-05 0.0011 19.5 4.4 1 23 336 358 336 358 0.98

4 10 0.0014 0.11 13.2 6.2 1 23 366 388 366 388 0.98

5 10 7.8e-06 0.00062 20.3 0.2 2 23 398 420 397 420 0.95

6 10 0.00022 0.017 15.8 1.0 1 23 426 448 426 448 0.98

7 10 5.9e-06 0.00047 20.7 0.3 2 23 455 476 454 476 0.96

8 10 0.00014 0.011 16.4 1.0 1 23 481 503 481 503 0.98

9 10 6e-06 0.00047 20.7 1.5 1 23 509 531 509 531 0.96

10 10 0.022 1.8 9.4 2.8 1 23 537 560 537 560 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.2	16	6.4	6.8	1	23	280	303	280	303	0.91
2	10	4.7	3.7e+02	2.1	0.4	5	23	312	330	311	330	0.94
3	10	1.4e-05	0.0011	19.5	4.4	1	23	336	358	336	358	0.98
4	10	0.0014	0.11	13.2	6.2	1	23	366	388	366	388	0.98
5	10	7.8e-06	0.00062	20.3	0.2	2	23	398	420	397	420	0.95
6	10	0.00022	0.017	15.8	1.0	1	23	426	448	426	448	0.98
7	10	5.9e-06	0.00047	20.7	0.3	2	23	455	476	454	476	0.96
8	10	0.00014	0.011	16.4	1.0	1	23	481	503	481	503	0.98
9	10	6e-06	0.00047	20.7	1.5	1	23	509	531	509	531	0.96
10	10	0.022	1.8	9.4	2.8	1	23	537	560	537	560	0.96

Sequence Information

Coding Sequence: ATGAATCAGAGCATTGTAAGCTTACTTTGTCGCTTGTGTGCTGCTCGTGAGATAAGTACGGATCTAGCAGAAAAAGATGCGTCCTCCAAGAAGAGTATAATAACGTTGGCGACGAAACATCTGAAAATCAGGATCAACGATAAGCAACCTTTACCGCAAAGGTTTTGCGCGGTTTGTATTCAAGAACTTGAAACCTTCGACGCGTTTAACAAGAAATGCCACTCAGTTCAAGATTTATTGAAAGCTCTATCGGGAGGAGCTCCTTTAACCGAAGATCAAAAACAACTCTTACCCACCGATTTGCTGGAAAAAGTAGAATTCGCACCGGTGACTGTGGAAGCTATTCAAAAAGCCGATCTAACGGATCCTTATTATTCGAGTAACAACGAGGACGATTTCGAATACGCGGACGATCCGGATTATCACGATGATCAAATTGACCACGACGATGATTACGATGAGGAAATCCCTCTAGCTGTACGTGCGAAACGAAAAACTAAACCGTCACCTTCGGAGCCGAAACGTAAACGAGGCAGACCTAGGAAAGATTCTCCGAAGGTGCCTCCAATCCGTATCAAGGCAGtcaaggtgaaaaaatcggtAGCTTCGGTCGATACACCTTCAACCagcgaaaataataatactcaATATGAGATACGAGAAGATGGTACAAAGGATCCGTCAgctaaaaCTTCTCAAGAACCTCGGCCTGCTCAGCTTCCGATTAACgacgatgatgaaaatttcgattataaCGATACGGACGACTTGTTTGCTGATGAAGATTTTAAAGATCCTGAAAAGGCTGCGAAGAAGAATCCGTTTGCTCTGTTCGAATTTAAATGTCACATGTGCCAAGAAatattcaagaatttcagtatTCTGAAAAGACACTGTAAAAAGGAGCATAGCGCGTCGGCTTACGTGAATTGCGTCTGTGGAAAACAACTTCGAGCCAGAACCGCTATTATTGAACATCGCAGAAAACATACAGGAACTTCTCTTTACAAATGCGACACTTGTAATAAGACGTTTAATCGACGATCGTTAATGTGTCTGCATATGATAAGTCATATGCCCAAAGATGAACAACCCTACGTTTGTTGCAAATGTGCCAAACGATTCCATACGTCTTCGTTGctgaaaaaacatgaaaaagttCACTTACCAGAAGAAGAACGATTTTTAGACGTTTGtaatatttgtcaaaaaaaATTTACGAGCAAATCTGCGGTAAACGCTCATTTGCGAGCCGTGCATTacggtgagaaacccttcgtTTGCGAACATTGCGGTAATAGTTTCAGTTCGAAGGCGATATTAACCGATCACTTGACCACTCATTCGTCCTATGCTCCTTGGCCATGTAACGTTTGCGGCAGAAAtttcaaatcCAAGTACAGATTAAACGTGCACATGGATATGCACAGAAGCGTAAAATATCGATGTCCTCATTGCCCTATGGAATTATCCACGCGGCGTACCCTTCGTATGCATTTACTCGTgcataaagaagaaaaagcttACGTATGCAAAGTATGCTCGAAAGCATTCAGAAGGTCGAAAGATCTTAAGAACCATAGTAATCTTCACACGGGGCGACGGCCGTATAGATGCGAATTTTGCGAAAGGACCTTCGCGAACGGTAGTAACTGTCGAGCACACAAGTTGCGCATGCATCCCGAAGAACTAGGCGTTGAAAAGAACAGCCGCAGCTCGTCTAAACAAtctaaacaaacaaacaacctAAATTTGGTACCTGGTGCGGCCACAGCATCGACCAACAAGCCCAAAAATCTAACCACCTTGACAGATGTAGTCAAAAGCACACGTCTCGATTATACCAAATACGACACCAAGTACGAATTCCCTGCCGGTAGTCAGGATCTGAATTATTCAACAGATTTCGCTCGCTTCCCACTTCCATTAAATTTACATATGAAGAAGCCAGAGTTTATGGAGCTACCCGATATCAATCCTTATAACAGTTTCACTGGTGAAGTGGATTCGGATGTATCGAAAGTGCATCACTTTTTGTCGTATACTTGA
Protein Sequence: MNQSIVSLLCRLCAAREISTDLAEKDASSKKSIITLATKHLKIRINDKQPLPQRFCAVCIQELETFDAFNKKCHSVQDLLKALSGGAPLTEDQKQLLPTDLLEKVEFAPVTVEAIQKADLTDPYYSSNNEDDFEYADDPDYHDDQIDHDDDYDEEIPLAVRAKRKTKPSPSEPKRKRGRPRKDSPKVPPIRIKAVKVKKSVASVDTPSTSENNNTQYEIREDGTKDPSAKTSQEPRPAQLPINDDDENFDYNDTDDLFADEDFKDPEKAAKKNPFALFEFKCHMCQEIFKNFSILKRHCKKEHSASAYVNCVCGKQLRARTAIIEHRRKHTGTSLYKCDTCNKTFNRRSLMCLHMISHMPKDEQPYVCCKCAKRFHTSSLLKKHEKVHLPEEERFLDVCNICQKKFTSKSAVNAHLRAVHYGEKPFVCEHCGNSFSSKAILTDHLTTHSSYAPWPCNVCGRNFKSKYRLNVHMDMHRSVKYRCPHCPMELSTRRTLRMHLLVHKEEKAYVCKVCSKAFRRSKDLKNHSNLHTGRRPYRCEFCERTFANGSNCRAHKLRMHPEELGVEKNSRSSSKQSKQTNNLNLVPGAATASTNKPKNLTTLTDVVKSTRLDYTKYDTKYEFPAGSQDLNYSTDFARFPLPLNLHMKKPEFMELPDINPYNSFTGEVDSDVSKVHHFLSYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01491320;
90% Identity: iTF_01472656;
80% Identity: -