Tman010721.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01013031.1:3622-6278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 8.9 7.0 5.8 1 23 278 301 278 301 0.90 2 10 3.9 3.2e+02 2.1 0.4 5 23 310 328 309 328 0.94 3 10 2.8e-05 0.0024 18.3 5.3 1 23 334 356 334 356 0.98 4 10 0.0012 0.097 13.2 6.2 1 23 364 386 364 386 0.98 5 10 9.2e-06 0.00076 19.8 0.2 3 23 397 418 395 418 0.95 6 10 0.00018 0.015 15.8 1.0 1 23 424 446 424 446 0.98 7 10 4.9e-06 0.00041 20.7 0.3 2 23 453 474 452 474 0.96 8 10 0.00011 0.0095 16.4 1.0 1 23 479 501 479 501 0.98 9 10 4.9e-06 0.00041 20.7 1.5 1 23 507 529 507 529 0.96 10 10 0.018 1.5 9.4 2.8 1 23 535 558 535 558 0.96
Sequence Information
- Coding Sequence
- ATGAATCAGAGCATCCTGAGCATACTTTGTCGCTTATGTGCCACTCGAGAGATATGTACGGATTTAGCGGAAAAAGACGCGTCCACCAAGAAGAATATAATAACGTTGGCGacgaaacatttgaaaatcagGATCAACGATAAGCAACCTTTACCGCAGAAGTTTTGTGCGGATTGTATTCAACAACTAACGACCTTCGATgcgtttaacaaaaaatgtcaCTCGGTTCAAGATTTATTGAAAGCTTTATCAGGCGGAGCTCCTTTGGCCGAAGAtcaaaaacaacttttacCCGCCGATTTGCTGGAAAAAGTAGAACTTGCACCGGTAATTGCAGAAGCTacTGGGGATCTAGCGGATCCTTCTTATTCGAGTAACAACGAAGACGATTTCGAGTACCAGGACGATCCGGATTACAATGATGATCAAATTGACCATGACGATGATTATGATGATGAAACGCCTCTAGCTGTACGtgccaaaagaaaaattaaaccttcACCTTCGGAGCCGAAACGTAAACGGGGTAGACCTAGGAAAGATTCTCCGAAAGTGCCTCCAATCCGTATCAAGGCagttaaatcgaaaaaattgacagcttCGATCGATGCACCTTCGACCagcgaaaataataatacgagATACGAGATACGAGAAGATGGTACCGAGGATCCACCAACTAAAaCTGCTCAAGAATTTCGACCTGCTCAACCTCCGAttaacgacgacgatgaaaatttcgactatAACGATTCAGATGACTTGTTCCCTGGTGACGATTCGAAAGATCCTGTGAAAGCCGCAAAGAAGAATCCTTTTGCTCTGTTTGAaTTTAAATGTCACGTGTGCCAAGAaatattcaagaattttagtattttaaaaaggcaTTGTCAAAAGGAGCACACCACGTCGGCTTACGTGAATTGTGTCTGTGGAAAACAACTTCGAGCTAGAACCGCCATCATCGAACATCGCAGGAAACACACGGGAACTTCTCTTTACAAATGCGATACTTGTAATAAAACGTTTAATCGACGATCGTTAATGTGTCTGCATATGACAAGTCATATGCCCAAAGATGAACAACCCTACGTTTGTTGTAAATGTGCCAAACGATTCCATACGTCttcgttgttgaaaaaacatgaaaaagttCACTTACCAGAAGAAGAACGATTTTTAGATATTTGTAATATTTGCCAGAAGAAGTTTACCAGCAAGTCTGCGGTAAATGCTCATTTGCGAGCAGTGCACTACGGCGAGAAACCCTTCGTTTGCGAACATTGCGGTAATAGTTTCAGTTCTAAGGCGATATTAACCGATCACTTGACCACCCATTCGTCTTATGCTCCTTGGCCATGTAACGTTTGCGGCCGAAAtttcaaatccAAGTACAGATTAAACGTGCACATGGACATGCACAGGAGCGTCAAATATCGATGTCCTCATTGTCCTATGGAGTTATCTACGCGACGTACCCTTCGTATGCATTTACTCGTGCATAAAGAGGAAAAAGCGTACGTGTGTAAAGTATGCTCGAAAGCGTTCAGAAGGTCGAAAGATCTTAAGAACCACAGCAATCTTCACACGGGTCGTAGGCCTTACAGATGCGAATTCTGCGAAAGGACATTCGCCAACGGTAGTAATTGTAGAGCCCACAAGTTGCGCATGCATCCCGAAGAATTAGGCGTCGAGAAGAACAGCCGTAGCTCGTCTAAACAAtctaaacaaacaaacaactTGAATTTAGTAGCCGGTTCGACCACCGAAACGGGCAACAAGCCCAAAAGTCTAACCACCTTGACCGATGTAGTCAAAAGCACGCGTCTCGATTATATGAAATACGACACCAAATATGAATTTCCCGCCGGTAGTCAGGATCTGAATTATTCGACGGATTTCGCTCGCTTCCCACTTCCATTAAATTTACATATGAAGAAGCCAGAGTTTATGGAGCTGCCCGATATTAATCCTTATAACACTTTTACTAGCGAAGTTGATTCGGACGTATCGAAAGTACATCACTTTTTGTCGTATACTTGA
- Protein Sequence
- MNQSILSILCRLCATREICTDLAEKDASTKKNIITLATKHLKIRINDKQPLPQKFCADCIQQLTTFDAFNKKCHSVQDLLKALSGGAPLAEDQKQLLPADLLEKVELAPVIAEATGDLADPSYSSNNEDDFEYQDDPDYNDDQIDHDDDYDDETPLAVRAKRKIKPSPSEPKRKRGRPRKDSPKVPPIRIKAVKSKKLTASIDAPSTSENNNTRYEIREDGTEDPPTKTAQEFRPAQPPINDDDENFDYNDSDDLFPGDDSKDPVKAAKKNPFALFEFKCHVCQEIFKNFSILKRHCQKEHTTSAYVNCVCGKQLRARTAIIEHRRKHTGTSLYKCDTCNKTFNRRSLMCLHMTSHMPKDEQPYVCCKCAKRFHTSSLLKKHEKVHLPEEERFLDICNICQKKFTSKSAVNAHLRAVHYGEKPFVCEHCGNSFSSKAILTDHLTTHSSYAPWPCNVCGRNFKSKYRLNVHMDMHRSVKYRCPHCPMELSTRRTLRMHLLVHKEEKAYVCKVCSKAFRRSKDLKNHSNLHTGRRPYRCEFCERTFANGSNCRAHKLRMHPEELGVEKNSRSSSKQSKQTNNLNLVAGSTTETGNKPKSLTTLTDVVKSTRLDYMKYDTKYEFPAGSQDLNYSTDFARFPLPLNLHMKKPEFMELPDINPYNTFTSEVDSDVSKVHHFLSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491320;
- 90% Identity
- iTF_01150692;
- 80% Identity
- -