Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028274.1:3290527-3292470[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.58 8.3e+03 -2.3 0.0 21 44 195 218 192 226 0.79

2 14 0.044 6.3e+02 1.3 0.2 21 44 251 274 247 282 0.77

3 14 0.0016 22 5.9 0.1 21 48 279 306 271 310 0.82

4 14 0.0039 56 4.6 0.1 21 52 307 338 304 340 0.88

5 14 0.1 1.4e+03 0.1 0.0 18 45 360 387 345 390 0.72

6 14 4.4e-06 0.063 14.1 0.2 20 53 390 423 386 424 0.89

7 14 0.00027 3.9 8.3 0.1 21 52 419 450 415 452 0.88

8 14 0.018 2.5e+02 2.5 0.1 23 52 449 478 445 480 0.87

9 14 0.051 7.3e+02 1.1 0.1 21 43 475 497 463 501 0.88

10 14 0.034 4.9e+02 1.6 0.0 21 48 503 530 498 534 0.85

11 14 0.00089 13 6.7 0.1 21 45 531 555 527 564 0.89

12 14 0.0036 51 4.7 0.1 22 52 560 590 556 592 0.84

13 14 0.033 4.8e+02 1.6 0.1 22 44 588 610 586 620 0.83

14 14 0.063 8.9e+02 0.8 0.1 17 44 610 638 602 642 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.58	8.3e+03	-2.3	0.0	21	44	195	218	192	226	0.79
2	14	0.044	6.3e+02	1.3	0.2	21	44	251	274	247	282	0.77
3	14	0.0016	22	5.9	0.1	21	48	279	306	271	310	0.82
4	14	0.0039	56	4.6	0.1	21	52	307	338	304	340	0.88
5	14	0.1	1.4e+03	0.1	0.0	18	45	360	387	345	390	0.72
6	14	4.4e-06	0.063	14.1	0.2	20	53	390	423	386	424	0.89
7	14	0.00027	3.9	8.3	0.1	21	52	419	450	415	452	0.88
8	14	0.018	2.5e+02	2.5	0.1	23	52	449	478	445	480	0.87
9	14	0.051	7.3e+02	1.1	0.1	21	43	475	497	463	501	0.88
10	14	0.034	4.9e+02	1.6	0.0	21	48	503	530	498	534	0.85
11	14	0.00089	13	6.7	0.1	21	45	531	555	527	564	0.89
12	14	0.0036	51	4.7	0.1	22	52	560	590	556	592	0.84
13	14	0.033	4.8e+02	1.6	0.1	22	44	588	610	586	620	0.83
14	14	0.063	8.9e+02	0.8	0.1	17	44	610	638	602	642	0.78

Sequence Information

Coding Sequence: atGATGAATGAAGAAGATATAAAAATGAAGGAAGCAATGTCACCAGATGGAAGTATTCATCCTGTGAAACCAGAGGACTTAAAGACAGAAAAACAATCACCTGAAGAAACATGTAATTTGATGTATCCAATACAAGTAAAAGTAGAAGAAATACCACTAGATGAAATAAATAAGTTGACGAATTCAGAGGATTTAAAAATGGAAGAAAAACTTACACACAGTTTATTGCAACCAGACGATATAAAACAAGAAGTAAATGAGGACGAAAATAATATAGAGATTTCAGTAGATGTTGTTATTCCGACTGATGAAACGGTTCAAATGACAAAACAGATTGGTGGTACAGACGTAGAAGCAAATAATGAGGATTCAAGCAACTCGGAATCATTCAATGATTCTTTGGACAACAGTGATGTTaaagatgaaaatattattaaatctcCACGTAAAAGAAATAGCAAACAAATACATAATGATGACTCAACCGAATCATCTGAAGATGAAAGGGattatgtttgtaaatattGCACAAAACAGTTTCTTAGTAAATATCGTTTAAATAAACATCTTCCAACTCACACTGGTGAAAGACCATTTGCATGCGATGAATGTCATAAAGCATTCAGTAATGCAAGTGCACTGAAAACGCATGAAAGAGTTCATAGTGGTATAAAACCTTATGCATGCAAAGAATGTGACCAAAAATTTGCCTATGTTAATAGCCTAAAAATACAcataagaactcatactggtgaaaaacctcaTGCATGTGAGATATGTCAGAAAAGGTTTTCTGAACTGAGCAGTTTGAGGGTACATAAAAGAATtcattctggtgaaaaaccttacacGTGTGATATTTGTCAAAAATCATTCACTAATTTAACTGGTATAAAAAGACACATAATGATTCACAACCGTGAAAAACCTTTTGCATGTAATTTATGTGGCAGTAGGTTTGCGAAGGAAACTACTTTAAGGGCACATCTGATGTTGCATGTCGGTGAAAAACCTTTTGTATGTGAagtttgtgaaaaaagattcAGCAGTCccacttatttaaaaaaacaccaaGTAAAACATATAGATGAAAAACTTCATGGATGTGAATTTTGTGAAAAAGCTTTTTTCACCAAAGGTGATTTAAGAAGACACCTGACCAGTCATAGAAGCGAAAGACCTTATTCATGTCAAATTTGTGAAAAAGCTTTCACTAGTTCAGTTGGTTTGAAAAGACATCTTGAAAAGCATACTGATGAAAAACCTCATGTTTGTGAAGTCTGTCAAAAAGCATTTTCTCTTACAAGAGATTTACAGAAACATCTTAAAATTCATACTGACAAAAAACCTCACTTAtgtgaaatttgtaaaaaagGGTTTTCCAATCCATGTGATTTAAAAAGGCATATTAGAATTCATAATGGTGAAAAACCTCATCTATGTGAGCTTTGCGAAAAAGCCTTTTCCAGTGCAACTGATTTAAAAAGACATCAGGGAACCCATACTGATGAAAGACCTTATGTATGTGAAGTTTGTGAAAAGGCATTTACACTAATGACAGATTTAAACAGACATGTTAAAATTCACACTGATGAAAAACCTCATTTATGTGATATTTGTCAAAAAGCATTCCCCGtcttaagtaatttaaaaagacATCTCAAAACTCATACTGATGAAAAAAATCATGTATGTAATGTTTGTCAGAAAGCATTTGCCAATACAACAAATTTAAGAAAACATCAGAAAATTCATATTGGTGAAAAACCCCATGTATGTGAAGTTTGTGAAAAAGCGTTTATCTTTCCAGCGGAACTAAGAAGACATTCAAGAACTCATACTGGGGAGAAACCTTTTGCATGTGAAACTTGTGAAAAAGCATTTTCTAGCAAAGGTGATTTAAATAGACATATACGAACTCACAGCAGTCAAATatcgaaataa
Protein Sequence: MMNEEDIKMKEAMSPDGSIHPVKPEDLKTEKQSPEETCNLMYPIQVKVEEIPLDEINKLTNSEDLKMEEKLTHSLLQPDDIKQEVNEDENNIEISVDVVIPTDETVQMTKQIGGTDVEANNEDSSNSESFNDSLDNSDVKDENIIKSPRKRNSKQIHNDDSTESSEDERDYVCKYCTKQFLSKYRLNKHLPTHTGERPFACDECHKAFSNASALKTHERVHSGIKPYACKECDQKFAYVNSLKIHIRTHTGEKPHACEICQKRFSELSSLRVHKRIHSGEKPYTCDICQKSFTNLTGIKRHIMIHNREKPFACNLCGSRFAKETTLRAHLMLHVGEKPFVCEVCEKRFSSPTYLKKHQVKHIDEKLHGCEFCEKAFFTKGDLRRHLTSHRSERPYSCQICEKAFTSSVGLKRHLEKHTDEKPHVCEVCQKAFSLTRDLQKHLKIHTDKKPHLCEICKKGFSNPCDLKRHIRIHNGEKPHLCELCEKAFSSATDLKRHQGTHTDERPYVCEVCEKAFTLMTDLNRHVKIHTDEKPHLCDICQKAFPVLSNLKRHLKTHTDEKNHVCNVCQKAFANTTNLRKHQKIHIGEKPHVCEVCEKAFIFPAELRRHSRTHTGEKPFACETCEKAFSSKGDLNRHIRTHSSQISK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490331;
90% Identity: iTF_01490331;
80% Identity: iTF_01490331;