Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028274.1:3290527-3292470[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.017 1.4 10.2 2.7 1 23 171 193 171 193 0.92

2 17 6.5e-07 5.4e-05 24.1 0.6 1 23 199 221 199 221 0.97

3 17 1e-05 0.00086 20.3 0.5 1 23 227 249 227 249 0.98

4 17 1.9e-05 0.0015 19.5 1.5 1 23 255 277 255 277 0.96

5 17 3.6e-06 0.0003 21.7 0.5 1 23 283 305 283 305 0.98

6 17 0.00071 0.059 14.5 0.2 1 23 311 333 311 333 0.96

7 17 2.8e-06 0.00023 22.1 1.1 1 23 339 361 339 361 0.97

8 17 0.00012 0.0097 17.0 0.8 3 23 369 389 368 389 0.98

9 17 2.1e-06 0.00018 22.4 0.5 1 23 395 417 395 417 0.98

10 17 4.8e-05 0.004 18.2 1.3 1 23 423 445 423 445 0.97

11 17 4.2e-06 0.00035 21.5 3.1 3 23 453 473 451 473 0.96

12 17 2e-05 0.0016 19.4 1.0 3 23 481 501 479 501 0.95

13 17 4.1e-05 0.0034 18.4 0.1 1 23 507 529 507 529 0.98

14 17 2.9e-06 0.00024 22.0 1.3 3 23 537 557 535 557 0.96

15 17 2.6e-06 0.00021 22.2 2.1 1 23 563 585 563 585 0.97

16 17 1e-05 0.00085 20.3 0.5 1 23 591 613 591 613 0.98

17 17 8.8e-08 7.4e-06 26.8 0.4 1 23 619 641 619 641 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.017	1.4	10.2	2.7	1	23	171	193	171	193	0.92
2	17	6.5e-07	5.4e-05	24.1	0.6	1	23	199	221	199	221	0.97
3	17	1e-05	0.00086	20.3	0.5	1	23	227	249	227	249	0.98
4	17	1.9e-05	0.0015	19.5	1.5	1	23	255	277	255	277	0.96
5	17	3.6e-06	0.0003	21.7	0.5	1	23	283	305	283	305	0.98
6	17	0.00071	0.059	14.5	0.2	1	23	311	333	311	333	0.96
7	17	2.8e-06	0.00023	22.1	1.1	1	23	339	361	339	361	0.97
8	17	0.00012	0.0097	17.0	0.8	3	23	369	389	368	389	0.98
9	17	2.1e-06	0.00018	22.4	0.5	1	23	395	417	395	417	0.98
10	17	4.8e-05	0.004	18.2	1.3	1	23	423	445	423	445	0.97
11	17	4.2e-06	0.00035	21.5	3.1	3	23	453	473	451	473	0.96
12	17	2e-05	0.0016	19.4	1.0	3	23	481	501	479	501	0.95
13	17	4.1e-05	0.0034	18.4	0.1	1	23	507	529	507	529	0.98
14	17	2.9e-06	0.00024	22.0	1.3	3	23	537	557	535	557	0.96
15	17	2.6e-06	0.00021	22.2	2.1	1	23	563	585	563	585	0.97
16	17	1e-05	0.00085	20.3	0.5	1	23	591	613	591	613	0.98
17	17	8.8e-08	7.4e-06	26.8	0.4	1	23	619	641	619	641	0.97

Sequence Information

Coding Sequence: atGATGAATGAAGAAGATATAAAAATGAAGGAAGCAATGTCACCAGATGGAAGTATTCATCCTGTGAAACCAGAGGACTTAAAGACAGAAAAACAATCACCTGAAGAAACATGTAATTTGATGTATCCAATACAAGTAAAAGTAGAAGAAATACCACTAGATGAAATAAATAAGTTGACGAATTCAGAGGATTTAAAAATGGAAGAAAAACTTACACACAGTTTATTGCAACCAGACGATATAAAACAAGAAGTAAATGAGGACGAAAATAATATAGAGATTTCAGTAGATGTTGTTATTCCGACTGATGAAACGGTTCAAATGACAAAACAGATTGGTGGTACAGACGTAGAAGCAAATAATGAGGATTCAAGCAACTCGGAATCATTCAATGATTCTTTGGACAACAGTGATGTTaaagatgaaaatattattaaatctcCACGTAAAAGAAATAGCAAACAAATACATAATGATGACTCAACCGAATCATCTGAAGATGAAAGGGattatgtttgtaaatattGCACAAAACAGTTTCTTAGTAAATATCGTTTAAATAAACATCTTCCAACTCACACTGGTGAAAGACCATTTGCATGCGATGAATGTCATAAAGCATTCAGTAATGCAAGTGCACTGAAAACGCATGAAAGAGTTCATAGTGGTATAAAACCTTATGCATGCAAAGAATGTGACCAAAAATTTGCCTATGTTAATAGCCTAAAAATACAcataagaactcatactggtgaaaaacctcaTGCATGTGAGATATGTCAGAAAAGGTTTTCTGAACTGAGCAGTTTGAGGGTACATAAAAGAATtcattctggtgaaaaaccttacacGTGTGATATTTGTCAAAAATCATTCACTAATTTAACTGGTATAAAAAGACACATAATGATTCACAACCGTGAAAAACCTTTTGCATGTAATTTATGTGGCAGTAGGTTTGCGAAGGAAACTACTTTAAGGGCACATCTGATGTTGCATGTCGGTGAAAAACCTTTTGTATGTGAagtttgtgaaaaaagattcAGCAGTCccacttatttaaaaaaacaccaaGTAAAACATATAGATGAAAAACTTCATGGATGTGAATTTTGTGAAAAAGCTTTTTTCACCAAAGGTGATTTAAGAAGACACCTGACCAGTCATAGAAGCGAAAGACCTTATTCATGTCAAATTTGTGAAAAAGCTTTCACTAGTTCAGTTGGTTTGAAAAGACATCTTGAAAAGCATACTGATGAAAAACCTCATGTTTGTGAAGTCTGTCAAAAAGCATTTTCTCTTACAAGAGATTTACAGAAACATCTTAAAATTCATACTGACAAAAAACCTCACTTAtgtgaaatttgtaaaaaagGGTTTTCCAATCCATGTGATTTAAAAAGGCATATTAGAATTCATAATGGTGAAAAACCTCATCTATGTGAGCTTTGCGAAAAAGCCTTTTCCAGTGCAACTGATTTAAAAAGACATCAGGGAACCCATACTGATGAAAGACCTTATGTATGTGAAGTTTGTGAAAAGGCATTTACACTAATGACAGATTTAAACAGACATGTTAAAATTCACACTGATGAAAAACCTCATTTATGTGATATTTGTCAAAAAGCATTCCCCGtcttaagtaatttaaaaagacATCTCAAAACTCATACTGATGAAAAAAATCATGTATGTAATGTTTGTCAGAAAGCATTTGCCAATACAACAAATTTAAGAAAACATCAGAAAATTCATATTGGTGAAAAACCCCATGTATGTGAAGTTTGTGAAAAAGCGTTTATCTTTCCAGCGGAACTAAGAAGACATTCAAGAACTCATACTGGGGAGAAACCTTTTGCATGTGAAACTTGTGAAAAAGCATTTTCTAGCAAAGGTGATTTAAATAGACATATACGAACTCACAGCAGTCAAATatcgaaataa
Protein Sequence: MMNEEDIKMKEAMSPDGSIHPVKPEDLKTEKQSPEETCNLMYPIQVKVEEIPLDEINKLTNSEDLKMEEKLTHSLLQPDDIKQEVNEDENNIEISVDVVIPTDETVQMTKQIGGTDVEANNEDSSNSESFNDSLDNSDVKDENIIKSPRKRNSKQIHNDDSTESSEDERDYVCKYCTKQFLSKYRLNKHLPTHTGERPFACDECHKAFSNASALKTHERVHSGIKPYACKECDQKFAYVNSLKIHIRTHTGEKPHACEICQKRFSELSSLRVHKRIHSGEKPYTCDICQKSFTNLTGIKRHIMIHNREKPFACNLCGSRFAKETTLRAHLMLHVGEKPFVCEVCEKRFSSPTYLKKHQVKHIDEKLHGCEFCEKAFFTKGDLRRHLTSHRSERPYSCQICEKAFTSSVGLKRHLEKHTDEKPHVCEVCQKAFSLTRDLQKHLKIHTDKKPHLCEICKKGFSNPCDLKRHIRIHNGEKPHLCELCEKAFSSATDLKRHQGTHTDERPYVCEVCEKAFTLMTDLNRHVKIHTDEKPHLCDICQKAFPVLSNLKRHLKTHTDEKNHVCNVCQKAFANTTNLRKHQKIHIGEKPHVCEVCEKAFIFPAELRRHSRTHTGEKPFACETCEKAFSSKGDLNRHIRTHSSQISK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490652;
90% Identity: iTF_01490652;
80% Identity: iTF_01490652;