Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028268.1:973050-976981[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0013 18 6.2 0.3 21 47 38 64 19 70 0.82

2 13 0.011 1.5e+02 3.2 0.0 21 46 66 91 61 98 0.85

3 13 0.021 2.9e+02 2.3 0.0 21 44 94 117 85 121 0.83

4 13 0.0027 38 5.2 0.0 22 52 123 153 118 155 0.86

5 13 0.0027 38 5.2 0.0 21 52 150 181 146 183 0.85

6 13 0.00011 1.6 9.6 0.0 21 52 178 209 174 211 0.88

7 13 0.042 5.9e+02 1.3 0.1 21 38 206 223 204 233 0.76

8 13 6.7e-06 0.095 13.5 0.1 18 54 231 267 224 267 0.89

9 13 0.023 3.3e+02 2.1 0.1 23 47 264 288 262 295 0.85

10 13 0.032 4.6e+02 1.7 0.1 14 45 283 314 280 321 0.84

11 13 0.0018 25 5.7 0.0 21 46 345 370 342 377 0.86

12 13 0.13 1.9e+03 -0.2 0.0 34 48 466 480 439 486 0.74

13 13 0.29 4.1e+03 -1.4 0.0 23 44 483 504 479 507 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0013	18	6.2	0.3	21	47	38	64	19	70	0.82
2	13	0.011	1.5e+02	3.2	0.0	21	46	66	91	61	98	0.85
3	13	0.021	2.9e+02	2.3	0.0	21	44	94	117	85	121	0.83
4	13	0.0027	38	5.2	0.0	22	52	123	153	118	155	0.86
5	13	0.0027	38	5.2	0.0	21	52	150	181	146	183	0.85
6	13	0.00011	1.6	9.6	0.0	21	52	178	209	174	211	0.88
7	13	0.042	5.9e+02	1.3	0.1	21	38	206	223	204	233	0.76
8	13	6.7e-06	0.095	13.5	0.1	18	54	231	267	224	267	0.89
9	13	0.023	3.3e+02	2.1	0.1	23	47	264	288	262	295	0.85
10	13	0.032	4.6e+02	1.7	0.1	14	45	283	314	280	321	0.84
11	13	0.0018	25	5.7	0.0	21	46	345	370	342	377	0.86
12	13	0.13	1.9e+03	-0.2	0.0	34	48	466	480	439	486	0.74
13	13	0.29	4.1e+03	-1.4	0.0	23	44	483	504	479	507	0.83

Sequence Information

Coding Sequence: ATGAAATCTCTAGTAAAAGCTCGTCCTGGTGAAAAGCGTTTCAAGTGTAAAATTTGTGAAAAAGCGTTTAAACTGCCGTACAGTTTAAAAgaacatttaagaactcatacggGTGAAAAACCTTACGTGTGTGAAGTTTGTGAAAAAGCATTCAATAAATCGAGCTGTTTAAGAAAACATCAAAGAGTCCATACCGGTGAAAAGCCTTACGCATGTGAAGTGTGCAAAAAGGCATTTGCACAGAAAGGtgctttaaaaaaacatagaaCAGTTCATGTTGGAGGAAAACCATATAAATGTGATATTTGTGAAAGAGCATTTCCTTATTCAAGcagtttaaaaaaacatcttgTAACTCATTCTGGGGACAGGCCTTTTGTTTGTGAAGTTTGTGGAAAATCATTTGCACAGGCAAGCAATTTGAAAGATCATGTCAGAATTCACACTGGAGAAAAACCTCATTTATGTAAGTTTTGTGACAAAGCATTTGTGCATTCAAGCAATTTAAAAggacatctaagaactcataccggAGAAAAACCATATGTATGTGAAATATGTTCGAAAGGATTTACTCAGTCAAGCGCTTTAAAAGAACATCTAAAAGTGCATACAGGTGAAAAACCTTATACTTGTGAAGTTTGTGAAAAGACATTTGCCCAACTAATCTCTATCAAAGAACATCGTaaaactcatactggtgaaaaaccttatATGTGCAAAATTTGTGAAAAGAAATTCtccaaaaaaaataacttaaaaagacATTTCATTCTTCATATCAATGCAAAACCATATGTTTGCGATGTTTGTCCGAAAGCATTCAGCAATAGAGAGAACTTAAAGAAACATCGTAATCTCCATTCCGCTGAAAAACATCATGTATGTCACATTTGTACGAAAATATTTACTGAACTAAATGATCTCAAAATACATCTAAAATCTCACAGTGAAGAAAAACAAAGGTGTGGAATTCGTGAAAAAGCTTTCAAAGAGTCTAATATTGTATCAGTACATATAAATACCTATACTGAAGAAAAACCTTATGTGTGTGAAATATGTAAAAAAGCATTCACCGAATCAACCAGCTTAAAAGAACATCTTGTAACTCATACACGTGAAAAACCTTACTTATATGATGAACCTGTAACATCAACTGTTGAATCAAAAGTACATCAAACATGTCATACTGATGAAAAACCTTATGTTTGTGAAGATTCTGAAACAGCATTCAGTGACTCAAGCTCTTCAAAAGAACATTTCGGAACAAAAACAGAGGAAAAACCCTATGTATGTGAAAGTTCAAAAAGTCATACTGATGAAAAACCTCCTGTCAAAGAAAATTCAAACTGTACAActgaaaaactttatttatgtgAAAATCCTGAAGAAACATTGATCCAATCAAGTACTTTGAAAGAACATTTAGAAACTAATGTTGATAAAAAACCTTATTTATGTAAAGTGTGTAAAAGAGCATTTACCCGATCAAGTAGTTTTGAAAAGCATCTCGTAACTCATGCCGGTGACGAGCCCTATGCAAGTGGAGTCTCTGAAGAAACATTTAATGCTTCAAGCAGTCTAAAGGAACATTCAGAAACTCAGTCTGATGAAAAACCTAAGAAACCAGGAAAAGTACCAAACTAA
Protein Sequence: MKSLVKARPGEKRFKCKICEKAFKLPYSLKEHLRTHTGEKPYVCEVCEKAFNKSSCLRKHQRVHTGEKPYACEVCKKAFAQKGALKKHRTVHVGGKPYKCDICERAFPYSSSLKKHLVTHSGDRPFVCEVCGKSFAQASNLKDHVRIHTGEKPHLCKFCDKAFVHSSNLKGHLRTHTGEKPYVCEICSKGFTQSSALKEHLKVHTGEKPYTCEVCEKTFAQLISIKEHRKTHTGEKPYMCKICEKKFSKKNNLKRHFILHINAKPYVCDVCPKAFSNRENLKKHRNLHSAEKHHVCHICTKIFTELNDLKIHLKSHSEEKQRCGIREKAFKESNIVSVHINTYTEEKPYVCEICKKAFTESTSLKEHLVTHTREKPYLYDEPVTSTVESKVHQTCHTDEKPYVCEDSETAFSDSSSSKEHFGTKTEEKPYVCESSKSHTDEKPPVKENSNCTTEKLYLCENPEETLIQSSTLKEHLETNVDKKPYLCKVCKRAFTRSSSFEKHLVTHAGDEPYASGVSEETFNASSSLKEHSETQSDEKPKKPGKVPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490326;
90% Identity: iTF_01490326;
80% Identity: iTF_01490326;