Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028268.1:973050-976981[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.046 45 4.8 1.9 14 39 11 33 5 36 0.74

2 14 0.013 13 6.5 3.5 13 38 38 60 28 65 0.79

3 14 1.3 1.2e+03 0.2 0.2 18 29 71 82 61 92 0.79

4 14 0.011 11 6.8 0.1 18 41 99 119 95 121 0.90

5 14 0.034 34 5.2 0.1 18 40 127 146 123 148 0.90

6 14 0.0001 0.1 13.3 1.0 1 41 139 175 139 177 0.92

7 14 0.024 24 5.7 0.2 17 40 182 202 176 205 0.87

8 14 0.54 5.3e+02 1.4 0.3 17 27 210 220 202 231 0.84

9 14 0.0015 1.5 9.5 3.2 18 38 239 256 228 264 0.87

10 14 0.037 36 5.1 1.2 2 38 252 284 251 286 0.88

11 14 1 1e+03 0.5 5.4 3 40 281 314 279 318 0.76

12 14 0.00097 0.96 10.2 0.3 14 41 346 370 338 373 0.84

13 14 1.5 1.5e+03 -0.1 0.0 32 42 469 479 464 481 0.88

14 14 0.032 32 5.3 0.2 19 41 487 506 477 507 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.046	45	4.8	1.9	14	39	11	33	5	36	0.74
2	14	0.013	13	6.5	3.5	13	38	38	60	28	65	0.79
3	14	1.3	1.2e+03	0.2	0.2	18	29	71	82	61	92	0.79
4	14	0.011	11	6.8	0.1	18	41	99	119	95	121	0.90
5	14	0.034	34	5.2	0.1	18	40	127	146	123	148	0.90
6	14	0.0001	0.1	13.3	1.0	1	41	139	175	139	177	0.92
7	14	0.024	24	5.7	0.2	17	40	182	202	176	205	0.87
8	14	0.54	5.3e+02	1.4	0.3	17	27	210	220	202	231	0.84
9	14	0.0015	1.5	9.5	3.2	18	38	239	256	228	264	0.87
10	14	0.037	36	5.1	1.2	2	38	252	284	251	286	0.88
11	14	1	1e+03	0.5	5.4	3	40	281	314	279	318	0.76
12	14	0.00097	0.96	10.2	0.3	14	41	346	370	338	373	0.84
13	14	1.5	1.5e+03	-0.1	0.0	32	42	469	479	464	481	0.88
14	14	0.032	32	5.3	0.2	19	41	487	506	477	507	0.83

Sequence Information

Coding Sequence: ATGAAATCTCTAGTAAAAGCTCGTCCTGGTGAAAAGCGTTTCAAGTGTAAAATTTGTGAAAAAGCGTTTAAACTGCCGTACAGTTTAAAAgaacatttaagaactcatacggGTGAAAAACCTTACGTGTGTGAAGTTTGTGAAAAAGCATTCAATAAATCGAGCTGTTTAAGAAAACATCAAAGAGTCCATACCGGTGAAAAGCCTTACGCATGTGAAGTGTGCAAAAAGGCATTTGCACAGAAAGGtgctttaaaaaaacatagaaCAGTTCATGTTGGAGGAAAACCATATAAATGTGATATTTGTGAAAGAGCATTTCCTTATTCAAGcagtttaaaaaaacatcttgTAACTCATTCTGGGGACAGGCCTTTTGTTTGTGAAGTTTGTGGAAAATCATTTGCACAGGCAAGCAATTTGAAAGATCATGTCAGAATTCACACTGGAGAAAAACCTCATTTATGTAAGTTTTGTGACAAAGCATTTGTGCATTCAAGCAATTTAAAAggacatctaagaactcataccggAGAAAAACCATATGTATGTGAAATATGTTCGAAAGGATTTACTCAGTCAAGCGCTTTAAAAGAACATCTAAAAGTGCATACAGGTGAAAAACCTTATACTTGTGAAGTTTGTGAAAAGACATTTGCCCAACTAATCTCTATCAAAGAACATCGTaaaactcatactggtgaaaaaccttatATGTGCAAAATTTGTGAAAAGAAATTCtccaaaaaaaataacttaaaaagacATTTCATTCTTCATATCAATGCAAAACCATATGTTTGCGATGTTTGTCCGAAAGCATTCAGCAATAGAGAGAACTTAAAGAAACATCGTAATCTCCATTCCGCTGAAAAACATCATGTATGTCACATTTGTACGAAAATATTTACTGAACTAAATGATCTCAAAATACATCTAAAATCTCACAGTGAAGAAAAACAAAGGTGTGGAATTCGTGAAAAAGCTTTCAAAGAGTCTAATATTGTATCAGTACATATAAATACCTATACTGAAGAAAAACCTTATGTGTGTGAAATATGTAAAAAAGCATTCACCGAATCAACCAGCTTAAAAGAACATCTTGTAACTCATACACGTGAAAAACCTTACTTATATGATGAACCTGTAACATCAACTGTTGAATCAAAAGTACATCAAACATGTCATACTGATGAAAAACCTTATGTTTGTGAAGATTCTGAAACAGCATTCAGTGACTCAAGCTCTTCAAAAGAACATTTCGGAACAAAAACAGAGGAAAAACCCTATGTATGTGAAAGTTCAAAAAGTCATACTGATGAAAAACCTCCTGTCAAAGAAAATTCAAACTGTACAActgaaaaactttatttatgtgAAAATCCTGAAGAAACATTGATCCAATCAAGTACTTTGAAAGAACATTTAGAAACTAATGTTGATAAAAAACCTTATTTATGTAAAGTGTGTAAAAGAGCATTTACCCGATCAAGTAGTTTTGAAAAGCATCTCGTAACTCATGCCGGTGACGAGCCCTATGCAAGTGGAGTCTCTGAAGAAACATTTAATGCTTCAAGCAGTCTAAAGGAACATTCAGAAACTCAGTCTGATGAAAAACCTAAGAAACCAGGAAAAGTACCAAACTAA
Protein Sequence: MKSLVKARPGEKRFKCKICEKAFKLPYSLKEHLRTHTGEKPYVCEVCEKAFNKSSCLRKHQRVHTGEKPYACEVCKKAFAQKGALKKHRTVHVGGKPYKCDICERAFPYSSSLKKHLVTHSGDRPFVCEVCGKSFAQASNLKDHVRIHTGEKPHLCKFCDKAFVHSSNLKGHLRTHTGEKPYVCEICSKGFTQSSALKEHLKVHTGEKPYTCEVCEKTFAQLISIKEHRKTHTGEKPYMCKICEKKFSKKNNLKRHFILHINAKPYVCDVCPKAFSNRENLKKHRNLHSAEKHHVCHICTKIFTELNDLKIHLKSHSEEKQRCGIREKAFKESNIVSVHINTYTEEKPYVCEICKKAFTESTSLKEHLVTHTREKPYLYDEPVTSTVESKVHQTCHTDEKPYVCEDSETAFSDSSSSKEHFGTKTEEKPYVCESSKSHTDEKPPVKENSNCTTEKLYLCENPEETLIQSSTLKEHLETNVDKKPYLCKVCKRAFTRSSSFEKHLVTHAGDEPYASGVSEETFNASSSLKEHSETQSDEKPKKPGKVPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490651; iTF_01490334;
90% Identity: iTF_01490651; iTF_01490334;
80% Identity: iTF_01490651; iTF_01490334;