Tvar001589.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- lov
- Assembly
- GCA_030269945.2
- Location
- AP028257.1:8134793-8138603[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-19 1.5e-15 57.3 0.0 1 44 82 125 82 126 0.96
Sequence Information
- Coding Sequence
- ATGTTACATAATCGTAAAATTTTAAGTGATACAAGTTTTATCTTAGGATTTAAACAACATTtGTTCGGCATCGACTCGCCCCTGGGCCTGTTCCCGCCCGGCATGGAACACAAGATGTACCCACTGATGGACGTGGAGCACCGCGCGCCGCCTCTCGACTCACAACTCTTCACTAATGTTAAAAAGAAATGGAGACCAAAAGGACAGCACAGCGCGCCGCGCGGTGGGCCACCTCGATCATGGACAAACGCAGAGCTCACGGAGGCTTTGCAGCATGTGTGGAACAAGAAAATGACGACGAGCCAAGCTTCGAGAATATTCGGCATCCCGTACAACTCGCTACTGATGTACGTGCGAGGCAAGTACGGGAAGAGCCTCAAACTGGAGCAGCTGCGGAAGGACTGTATCGGAGCGCCGCTCGACGTGCTCAACCTGAACTCTGggaacaacaacaacaaccacCCGTCGAGCAAGCACCACGACAAGGACGACCACCAGGGCGTGGGCCAGCGACCCGCCAGCTCCGAGCCCGACATCTCCTCCAACCCGATGTTCAACCCGTTCTCGCAAGGGTTCTACCCGGAGTTCCCGCCCGGGTTCCCCATGCCGCTCAACATGCTGCACCTGCTGCCGCCGAGCGAGAAGGCGAGGGAGCTGTACCAGTCGATGCCGATGGCGCTGGACTCGCTCTCGGGCGTCACCAAGGAGGAGGACTGCAAGAGCGATCGCTCCAAGGAGAACTCCGCGGACGAGGAGGGGGACAGCTACCGCGCGCCGCTGCCCCCGCACCCGCCGCCCGACACGCGCACGCTGCTGCACCACAACGGACAGGACTAG
- Protein Sequence
- MLHNRKILSDTSFILGFKQHLFGIDSPLGLFPPGMEHKMYPLMDVEHRAPPLDSQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGAPLDVLNLNSGNNNNNHPSSKHHDKDDHQGVGQRPASSEPDISSNPMFNPFSQGFYPEFPPGFPMPLNMLHLLPPSEKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGDSYRAPLPPHPPPDTRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00855805;
- 90% Identity
- iTF_00723895;
- 80% Identity
- -