Tpre010773.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1278170-1281551[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.044 18 5.0 0.2 23 48 224 249 207 254 0.84 2 10 0.089 37 4.0 0.0 23 48 253 278 250 284 0.89 3 10 1.8 7.4e+02 -0.1 0.0 23 48 282 307 275 313 0.82 4 10 1.8 7.4e+02 -0.1 0.0 23 46 311 334 305 342 0.86 5 10 0.041 17 5.1 0.0 26 48 343 365 336 370 0.90 6 10 0.0041 1.7 8.3 0.1 26 48 372 394 366 399 0.89 7 10 0.048 20 4.9 0.0 23 48 398 423 395 428 0.89 8 10 0.96 4e+02 0.7 0.0 23 48 427 452 421 457 0.84 9 10 3.5 1.5e+03 -1.1 0.0 23 47 456 480 453 486 0.83 10 10 1.1 4.5e+02 0.6 0.0 23 48 485 510 481 515 0.87
Sequence Information
- Coding Sequence
- ATGGAGTCGTTTTACGTTCACCAACCTTCAATACgGATAAAGCAAGAGCCGAGTGATGATTTGTTTTGCAATGACTACTTCAAGAACAATATGACGTTTCGACGCAATAtcggaaaatttgaaaataacacAGGCCAGTACGGCAATGCTACTCGTGGTCAAGGACAGGAGAACACTTTTTCGGTGTTACAAAATTTAACTGGCGATGAAATTATACCAGAGTTTGAATGTCACGATGTAAAGCCAACTATTAATTTCTTGCCAACAAAAATAACTGACTCTGAATATGTAAATGGCTTTgataacataaaaaatgaagaaaactTCAGTTACAACGACGAAGTTATAGAGGGagttgtaaataatataaaatcagAATTTTATGTCAATAATGAAGAAAAGACAATTGAGAAATTTAATCTCATGCCCTTACAATTTTATGACACCAATGAGAGTGATGTGAGAAGCAATgtaagatttgaaaatttcaagaaagaGACTTCAATTCAAGAAGGCATCGCTACTCACCATCGGTGTGCAAAGTCACTTacttttgaaatgaaaaaagacaaatttaGTTCCGTGTCTAATACCAGTAATGCTTTGAGAGCAGTATATGGATCTGAAAAAGATGAGCAGAAGAACATCAGTTCTGTTCACAAAAACTTGAAACCTTACAAATGCGAAGAGTGTCAAAAaacatttggacgaaaaagtaaTCTTCAAAGGCACATCAATTTGTTGCACAATAACTTGAAGCCTTACACGTGTGAAGTGTGTCCGAAAGCATTCGGACTCAAAAGAGGTCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACAAGTGCAAAATATGTCAAAAAGAATTCGGATTAAAATCTAATCTTGAAAAACATATTGGTGCAgtgcataaaaatttgaaacctGTTAAGTGTGAAGTTTGTCAAAAAGAATTCGGATCAAAACATAATCTCAAAATGCACATTGGTGCAGTGCATAAAAACTTGAAGTCTTTtcagtgtgagatttgtccaAAAGTATTTGGGCTaaaaggtaatctcaaaaGACATACGGAGGCAGTGCATAAAAATGTTAAGTCATACAAATGTGAAGTATGTGAAGGAGTATTCAGACAAAAAAGTACTCTTCAAACGCACATCAATTTGTTGCACAATATCTTGAAGCCATACACGTGTGAAGTGTGTCCGAAAGCATTCGGACTCAAACGAGATCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACATGTGTAAAATATGTCAAAGGgcatttggattaaaatctaATCTTGAAAAACATATTGGTGCAgtgcataaaaatttgaaacctTTTAAGTGTGAAGTTTGTCAAAAAGAATTCGGATCAAAACATAATCTCAAAATGCACATCGGTGCAGTGCATAAAAAGTTGAAACCTTTTAAGTGTGGAGTTTGTCAAAAAGCATTTGggcaaaaaattcatcttaAAACACATACAGAATCAGTGCACAACAATTTGAAACCATACTAG
- Protein Sequence
- MESFYVHQPSIRIKQEPSDDLFCNDYFKNNMTFRRNIGKFENNTGQYGNATRGQGQENTFSVLQNLTGDEIIPEFECHDVKPTINFLPTKITDSEYVNGFDNIKNEENFSYNDEVIEGVVNNIKSEFYVNNEEKTIEKFNLMPLQFYDTNESDVRSNVRFENFKKETSIQEGIATHHRCAKSLTFEMKKDKFSSVSNTSNALRAVYGSEKDEQKNISSVHKNLKPYKCEECQKTFGRKSNLQRHINLLHNNLKPYTCEVCPKAFGLKRGLTRHIDSVHKKLKPYKCKICQKEFGLKSNLEKHIGAVHKNLKPVKCEVCQKEFGSKHNLKMHIGAVHKNLKSFQCEICPKVFGLKGNLKRHTEAVHKNVKSYKCEVCEGVFRQKSTLQTHINLLHNILKPYTCEVCPKAFGLKRDLTRHIDSVHKKLKPYMCKICQRAFGLKSNLEKHIGAVHKNLKPFKCEVCQKEFGSKHNLKMHIGAVHKKLKPFKCGVCQKAFGQKIHLKTHTESVHNNLKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485246;
- 90% Identity
- iTF_01485246;
- 80% Identity
- iTF_01485246;