Tpre010773.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1278170-1281551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.5e-08 1.1e-06 28.3 1.3 1 23 226 249 226 249 0.97 2 10 0.00014 0.0023 17.8 0.1 1 23 255 278 255 278 0.96 3 10 1.7e-05 0.00028 20.7 0.3 1 22 284 305 284 307 0.91 4 10 0.00025 0.004 17.0 0.5 2 22 314 334 313 336 0.90 5 10 1.8e-05 0.00029 20.6 0.1 1 23 342 365 342 365 0.93 6 10 1.8e-05 0.00029 20.6 0.4 1 23 371 394 371 394 0.97 7 10 5e-05 0.00081 19.2 0.1 1 23 400 423 400 423 0.96 8 10 7.3e-05 0.0012 18.7 0.1 1 22 429 450 429 452 0.91 9 10 5.3e-05 0.00087 19.1 0.8 1 22 458 479 458 481 0.91 10 10 0.00012 0.002 18.0 1.4 1 23 487 510 487 510 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCGTTTTACGTTCACCAACCTTCAATACgGATAAAGCAAGAGCCGAGTGATGATTTGTTTTGCAATGACTACTTCAAGAACAATATGACGTTTCGACGCAATAtcggaaaatttgaaaataacacAGGCCAGTACGGCAATGCTACTCGTGGTCAAGGACAGGAGAACACTTTTTCGGTGTTACAAAATTTAACTGGCGATGAAATTATACCAGAGTTTGAATGTCACGATGTAAAGCCAACTATTAATTTCTTGCCAACAAAAATAACTGACTCTGAATATGTAAATGGCTTTgataacataaaaaatgaagaaaactTCAGTTACAACGACGAAGTTATAGAGGGagttgtaaataatataaaatcagAATTTTATGTCAATAATGAAGAAAAGACAATTGAGAAATTTAATCTCATGCCCTTACAATTTTATGACACCAATGAGAGTGATGTGAGAAGCAATgtaagatttgaaaatttcaagaaagaGACTTCAATTCAAGAAGGCATCGCTACTCACCATCGGTGTGCAAAGTCACTTacttttgaaatgaaaaaagacaaatttaGTTCCGTGTCTAATACCAGTAATGCTTTGAGAGCAGTATATGGATCTGAAAAAGATGAGCAGAAGAACATCAGTTCTGTTCACAAAAACTTGAAACCTTACAAATGCGAAGAGTGTCAAAAaacatttggacgaaaaagtaaTCTTCAAAGGCACATCAATTTGTTGCACAATAACTTGAAGCCTTACACGTGTGAAGTGTGTCCGAAAGCATTCGGACTCAAAAGAGGTCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACAAGTGCAAAATATGTCAAAAAGAATTCGGATTAAAATCTAATCTTGAAAAACATATTGGTGCAgtgcataaaaatttgaaacctGTTAAGTGTGAAGTTTGTCAAAAAGAATTCGGATCAAAACATAATCTCAAAATGCACATTGGTGCAGTGCATAAAAACTTGAAGTCTTTtcagtgtgagatttgtccaAAAGTATTTGGGCTaaaaggtaatctcaaaaGACATACGGAGGCAGTGCATAAAAATGTTAAGTCATACAAATGTGAAGTATGTGAAGGAGTATTCAGACAAAAAAGTACTCTTCAAACGCACATCAATTTGTTGCACAATATCTTGAAGCCATACACGTGTGAAGTGTGTCCGAAAGCATTCGGACTCAAACGAGATCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACATGTGTAAAATATGTCAAAGGgcatttggattaaaatctaATCTTGAAAAACATATTGGTGCAgtgcataaaaatttgaaacctTTTAAGTGTGAAGTTTGTCAAAAAGAATTCGGATCAAAACATAATCTCAAAATGCACATCGGTGCAGTGCATAAAAAGTTGAAACCTTTTAAGTGTGGAGTTTGTCAAAAAGCATTTGggcaaaaaattcatcttaAAACACATACAGAATCAGTGCACAACAATTTGAAACCATACTAG
- Protein Sequence
- MESFYVHQPSIRIKQEPSDDLFCNDYFKNNMTFRRNIGKFENNTGQYGNATRGQGQENTFSVLQNLTGDEIIPEFECHDVKPTINFLPTKITDSEYVNGFDNIKNEENFSYNDEVIEGVVNNIKSEFYVNNEEKTIEKFNLMPLQFYDTNESDVRSNVRFENFKKETSIQEGIATHHRCAKSLTFEMKKDKFSSVSNTSNALRAVYGSEKDEQKNISSVHKNLKPYKCEECQKTFGRKSNLQRHINLLHNNLKPYTCEVCPKAFGLKRGLTRHIDSVHKKLKPYKCKICQKEFGLKSNLEKHIGAVHKNLKPVKCEVCQKEFGSKHNLKMHIGAVHKNLKSFQCEICPKVFGLKGNLKRHTEAVHKNVKSYKCEVCEGVFRQKSTLQTHINLLHNILKPYTCEVCPKAFGLKRDLTRHIDSVHKKLKPYMCKICQRAFGLKSNLEKHIGAVHKNLKPFKCEVCQKEFGSKHNLKMHIGAVHKKLKPFKCGVCQKAFGQKIHLKTHTESVHNNLKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485829;
- 90% Identity
- iTF_01485829;
- 80% Identity
- iTF_01485829;