Tpre010935.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:595653-597810[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.4 5.6e+02 0.2 0.0 26 48 166 188 161 193 0.87 2 8 1.4 5.9e+02 0.2 0.2 26 48 194 216 192 221 0.84 3 8 0.2 83 2.9 0.1 26 48 222 244 216 250 0.89 4 8 1 4.3e+02 0.6 0.1 26 48 250 272 244 278 0.88 5 8 0.016 6.5 6.5 0.0 23 48 303 328 292 332 0.86 6 8 0.0053 2.2 8.0 0.0 24 48 360 384 356 389 0.90 7 8 8 3.3e+03 -2.2 0.0 27 48 419 440 417 444 0.79 8 8 0.0011 0.45 10.2 0.1 26 48 446 468 434 471 0.89
Sequence Information
- Coding Sequence
- ATGGAATCGAGTACTTTCTTCAATTGTCCTgttagAGTAAAAGACGAACCTCGTGATGAGCTTCtcaatgataatgattataaaataattgacacGACACCCGTCactcaaaatattaaatacgaAAGGTTTTGGCAAGAAAATGCAacccAAGAGCTTCTTCATGAATATGAcgaaaatcatgaaattgAACTTGACGATCTGGAAATCGAAATGGAATGTACCGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATCATTCTCCAAATCAATGGCTGAATGGTAATGAGTATAAAACAggaagcaaaattaaattagaaacTTTTGGGACAgtgaagaaagaaattttaagcGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGAGAGCAAAATAAACAAGAAACTGTTTCAAAAGAGctaaacaatgaaaataggCTCAAAATTCACAATGATACTAggcataataaaatcacacatgattgtaatatttgcggaaaatcattcaaatataAGAGTAATCTCCAAACACACATGGATTCGGTGCATCGTAAAATTAGGCATGCATGCGATacatgccaaaagacattctcagacaGAAGTAATCTCAGAAATCACATCAATTCGGTGCACAATCCAGTCcgacatgcatgtgatatatgtcaaaagacattctcagacaagcgttatctcaaaaaacacattaaTGCGATACATAATGGTGAATCACAtgtatgtgatatttgcgaaaagacattcatACAGAAAAgtcatctcaaaatccacatcgatgtgGTGCACCGTAAAATCACTCATCCATGTGAtaaatgccaaaagacattctcagatAAGGGTtatctcaaaaagcacatcgATTCGGAGCATAATGGTGTCCCTAATGTGTGTGACATTTGTGGGAAGACATTCtcacaaaaaagtaatctcaaaactcacattaaATCGATACATCATAAAATTACGCATCCATGTGATgaatgccaaaagacattttcaGACAAGTATTATCTTATAATCCACATCGATGCcgtgcataatggtgtcccATATGCGTGTGACATTTGTGGGAAGACATTCtcacaaaaaagtaatctcaaaactcacatcgaATCGATACATCATAAAATTACGCATCCATGTGATATGTGCACAAAGAAATTTACTACGAAAAGTATTCTTAAAGCCCATATCGATGCGGAGCACAATGGAATCACACACGCATGTGAtttctgcgaaaaaaaatttaaatataaaactcATCTCAAAAGGCATGTGAAATCGTCGCATAATGTTATAACCCATTCATGCGGGacatgcggaaagacattcagacaaaaaagaaatcttaAAGCTCACATCGACGTGGCGCATAATTCGCCCATCAAAACCtaa
- Protein Sequence
- MESSTFFNCPVRVKDEPRDELLNDNDYKIIDTTPVTQNIKYERFWQENATQELLHEYDENHEIELDDLEIEMECTDMKPNLLAVAKIEDHSPNQWLNGNEYKTGSKIKLETFGTVKKEILSEEETDLNFGRGLREQNKQETVSKELNNENRLKIHNDTRHNKITHDCNICGKSFKYKSNLQTHMDSVHRKIRHACDTCQKTFSDRSNLRNHINSVHNPVRHACDICQKTFSDKRYLKKHINAIHNGESHVCDICEKTFIQKSHLKIHIDVVHRKITHPCDKCQKTFSDKGYLKKHIDSEHNGVPNVCDICGKTFSQKSNLKTHIKSIHHKITHPCDECQKTFSDKYYLIIHIDAVHNGVPYACDICGKTFSQKSNLKTHIESIHHKITHPCDMCTKKFTTKSILKAHIDAEHNGITHACDFCEKKFKYKTHLKRHVKSSHNVITHSCGTCGKTFRQKRNLKAHIDVAHNSPIKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485149; iTF_01484927;
- 90% Identity
- iTF_01485149; iTF_01484927;
- 80% Identity
- iTF_01485149; iTF_01484927;