Tpre010935.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:595653-597810[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00054 0.04 13.4 4.5 15 44 161 189 152 189 0.83 2 10 0.0055 0.41 10.2 2.1 19 44 195 217 192 217 0.94 3 10 0.51 38 3.9 0.8 19 43 223 244 220 249 0.81 4 10 3.8 2.8e+02 1.1 3.8 14 39 246 268 236 273 0.69 5 10 0.6 45 3.7 0.2 19 43 279 300 275 301 0.86 6 10 4.8e-05 0.0036 16.8 0.9 18 43 306 328 304 329 0.94 7 10 0.00018 0.013 15.0 0.5 19 43 363 384 360 385 0.94 8 10 2.5 1.9e+02 1.7 0.5 19 43 391 412 388 413 0.87 9 10 0.0098 0.73 9.4 4.0 19 44 419 441 416 441 0.94 10 10 0.13 9.7 5.8 1.3 19 44 447 469 444 469 0.92
Sequence Information
- Coding Sequence
- ATGGAATCGAGTACTTTCTTCAATTGTCCTgttagAGTAAAAGACGAACCTCGTGATGAGCTTCtcaatgataatgattataaaataattgacacGACACCCGTCactcaaaatattaaatacgaAAGGTTTTGGCAAGAAAATGCAacccAAGAGCTTCTTCATGAATATGAcgaaaatcatgaaattgAACTTGACGATCTGGAAATCGAAATGGAATGTACCGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATCATTCTCCAAATCAATGGCTGAATGGTAATGAGTATAAAACAggaagcaaaattaaattagaaacTTTTGGGACAgtgaagaaagaaattttaagcGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGAGAGCAAAATAAACAAGAAACTGTTTCAAAAGAGctaaacaatgaaaataggCTCAAAATTCACAATGATACTAggcataataaaatcacacatgattgtaatatttgcggaaaatcattcaaatataAGAGTAATCTCCAAACACACATGGATTCGGTGCATCGTAAAATTAGGCATGCATGCGATacatgccaaaagacattctcagacaGAAGTAATCTCAGAAATCACATCAATTCGGTGCACAATCCAGTCcgacatgcatgtgatatatgtcaaaagacattctcagacaagcgttatctcaaaaaacacattaaTGCGATACATAATGGTGAATCACAtgtatgtgatatttgcgaaaagacattcatACAGAAAAgtcatctcaaaatccacatcgatgtgGTGCACCGTAAAATCACTCATCCATGTGAtaaatgccaaaagacattctcagatAAGGGTtatctcaaaaagcacatcgATTCGGAGCATAATGGTGTCCCTAATGTGTGTGACATTTGTGGGAAGACATTCtcacaaaaaagtaatctcaaaactcacattaaATCGATACATCATAAAATTACGCATCCATGTGATgaatgccaaaagacattttcaGACAAGTATTATCTTATAATCCACATCGATGCcgtgcataatggtgtcccATATGCGTGTGACATTTGTGGGAAGACATTCtcacaaaaaagtaatctcaaaactcacatcgaATCGATACATCATAAAATTACGCATCCATGTGATATGTGCACAAAGAAATTTACTACGAAAAGTATTCTTAAAGCCCATATCGATGCGGAGCACAATGGAATCACACACGCATGTGAtttctgcgaaaaaaaatttaaatataaaactcATCTCAAAAGGCATGTGAAATCGTCGCATAATGTTATAACCCATTCATGCGGGacatgcggaaagacattcagacaaaaaagaaatcttaAAGCTCACATCGACGTGGCGCATAATTCGCCCATCAAAACCtaa
- Protein Sequence
- MESSTFFNCPVRVKDEPRDELLNDNDYKIIDTTPVTQNIKYERFWQENATQELLHEYDENHEIELDDLEIEMECTDMKPNLLAVAKIEDHSPNQWLNGNEYKTGSKIKLETFGTVKKEILSEEETDLNFGRGLREQNKQETVSKELNNENRLKIHNDTRHNKITHDCNICGKSFKYKSNLQTHMDSVHRKIRHACDTCQKTFSDRSNLRNHINSVHNPVRHACDICQKTFSDKRYLKKHINAIHNGESHVCDICEKTFIQKSHLKIHIDVVHRKITHPCDKCQKTFSDKGYLKKHIDSEHNGVPNVCDICGKTFSQKSNLKTHIKSIHHKITHPCDECQKTFSDKYYLIIHIDAVHNGVPYACDICGKTFSQKSNLKTHIESIHHKITHPCDMCTKKFTTKSILKAHIDAEHNGITHACDFCEKKFKYKTHLKRHVKSSHNVITHSCGTCGKTFRQKRNLKAHIDVAHNSPIKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485827;
- 90% Identity
- iTF_01485827;
- 80% Identity
- iTF_01485827;