Tpre003603.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:352421-354767[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.82 3.4e+02 0.9 0.0 26 48 229 251 226 256 0.89 2 10 0.065 27 4.5 0.0 26 48 257 279 254 285 0.91 3 10 3 1.2e+03 -0.8 0.0 27 48 286 307 280 312 0.88 4 10 0.058 24 4.6 0.0 26 48 313 335 307 340 0.89 5 10 0.32 1.3e+02 2.3 0.1 26 48 341 363 337 366 0.89 6 10 0.025 10 5.8 0.1 27 48 398 419 395 423 0.91 7 10 0.043 18 5.0 0.1 26 48 425 447 420 453 0.87 8 10 0.0025 1 9.0 0.1 27 48 454 475 448 481 0.89 9 10 0.32 1.3e+02 2.3 0.0 27 48 482 503 477 508 0.91 10 10 0.41 1.7e+02 1.9 0.1 26 48 509 531 507 534 0.92
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGGTTCGTTCAATTGCgctgtcagAGTCAAAGAGGAATGTTATGATGAGTCTCGAGGTAAAAATGATTATGATATGATTGACGAAAACCCCGatataaaaaactttcaactCTTATCATTTCCGCAAGAAAATTTAaTCCATACCTTTCGAAAAAGTGACTTGAATCATCCACGTGAATTTAATAACGATGTTGAATTAGTCGTTGAATGTGAAGACGTCAAGCCCAACATTAATTTATTAGCAGttaagaaaattgaagaagatTCTCAAAATGGCTTGAAGGACATGGAGTACAATGATGTTTATACAACTCAAAACTTGATTAAAATGGAACCAACGGAGGAAGTACAACATGCATCTTTTGTGAACACCGCAGAAGAatcgaatttgaattcagACTGTAAACGtggcgagcaaaaaaaaacaagaaaaataacgaaagAGTTGAGCAacgaacataacctcaaaagaCACCGAGGTACGGTGCATAATGATACAAATTACGGATGTGAAACATGCGGAAAATATTTCTCAACTAACAGCAGTCTGAAAAGGCATATCCTATCAATACATCATGGTATTACCCActcatgtgataaatgcggaAAGTCTTTTACTCAAAAAGGTTATCTCAAAGGCCACATTGAGGCAGTCCACAAGGGCTTCACAAATGCCTGTGATATATGTGGAAGGACATTCTCAGACAAGAGTAAACTCCgaaaacacatcgattcgatgcataatggtgtcagaTATGCATGCGACATTTGCGGAAATGTGTTCAAACGAAAAGAGgatctcaaaacccacatcgagTCGGTGCATCAAAAAATCAGGCATccatgtgatatatgccaaaagacattctcacaaaaaggttatctcaaaactcacatcgattcggtgcacaacAAAATCAcgcatgcatgtgatatatgccaaGAGACATTCACACAGAAAACGaatctcaaaacccacatcgattcggtacatcgtaaaataaggcatgcatgcgatatatgccaaaagacacTCTCAGACAGGAATAGTCTCAGAAAgcacatcgattcagtgcataataaaatcacgcATCCATGCGATACATGTCGAAAGTCATTCACAACTAAAGTTAGTCTCAGaattcacatcgattcagtgcattataaaatcatgcatccatgtgatatatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagtCACGCATGTAATATTTGCGGAAATGTTTTTAAACGAAGAGgcaatctcaaaactcacgtcGATTCGGTGCATCAAAAATTCACGCATccatgtgatatatgccaaGAGATATTCACACAGAAAACGAATCTCAAAAGACACATCAATTCGGTACATCGTAAAATCACTTAtccatgcgatatatgccagaaaatatttacacaaaaagatATTCTCAAAAGCCACATCGAGTctgtgcataatggtgtcagaCATGCATGCGACATTTGCGAGAATATCTATAAACATAGAAGCgatctcaataaacacatcgattcgaaGCATAATGGTGTTAGACATGCATGTGATGTATGCCAAAAGACGTTCGCACAAAAAATTAGTCTCAAAGTCCATATCcattcggtgcataataaaattattacgtaCACATGTGATATGTGCCAAAAGACGTTCTCATACAAAAGTGGtctaaaaaaacacatcgtttcgatgcataatggtgttggacatgcgtgtggtatatga
- Protein Sequence
- MESSGSFNCAVRVKEECYDESRGKNDYDMIDENPDIKNFQLLSFPQENLIHTFRKSDLNHPREFNNDVELVVECEDVKPNINLLAVKKIEEDSQNGLKDMEYNDVYTTQNLIKMEPTEEVQHASFVNTAEESNLNSDCKRGEQKKTRKITKELSNEHNLKRHRGTVHNDTNYGCETCGKYFSTNSSLKRHILSIHHGITHSCDKCGKSFTQKGYLKGHIEAVHKGFTNACDICGRTFSDKSKLRKHIDSMHNGVRYACDICGNVFKRKEDLKTHIESVHQKIRHPCDICQKTFSQKGYLKTHIDSVHNKITHACDICQETFTQKTNLKTHIDSVHRKIRHACDICQKTLSDRNSLRKHIDSVHNKITHPCDTCRKSFTTKVSLRIHIDSVHYKIMHPCDICQKTFSNRSNLRKHIESVHNGVSHACNICGNVFKRRGNLKTHVDSVHQKFTHPCDICQEIFTQKTNLKRHINSVHRKITYPCDICQKIFTQKDILKSHIESVHNGVRHACDICENIYKHRSDLNKHIDSKHNGVRHACDVCQKTFAQKISLKVHIHSVHNKIITYTCDMCQKTFSYKSGLKKHIVSMHNGVGHACGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484877;
- 90% Identity
- iTF_01484877;
- 80% Identity
- iTF_01484877;