Tpre003603.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:352421-354767[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.1 3.8e+02 0.7 6.1 11 43 167 195 157 196 0.78 2 14 4.6 3.5e+02 0.8 0.4 19 29 202 212 199 224 0.73 3 14 0.002 0.15 11.6 0.7 15 44 226 252 214 252 0.87 4 14 0.009 0.67 9.5 0.1 19 44 258 280 255 280 0.93 5 14 0.18 13 5.4 0.4 19 43 286 307 282 312 0.82 6 14 0.0055 0.41 10.2 0.7 19 44 314 336 307 336 0.92 7 14 0.039 2.9 7.5 1.4 19 44 342 364 339 364 0.92 8 14 0.00035 0.026 14.0 2.1 19 44 398 420 386 420 0.92 9 14 0.0018 0.14 11.7 0.9 19 44 426 448 423 448 0.92 10 14 0.0006 0.045 13.3 0.7 19 44 454 476 450 476 0.95 11 14 0.11 8.5 6.0 0.1 19 44 482 504 480 504 0.92 12 14 0.43 32 4.1 3.3 19 44 510 532 507 532 0.93 13 14 3.9 2.9e+02 1.1 0.5 19 43 538 559 535 562 0.74 14 14 0.00056 0.042 13.4 4.0 18 44 566 589 554 589 0.91
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGGTTCGTTCAATTGCgctgtcagAGTCAAAGAGGAATGTTATGATGAGTCTCGAGGTAAAAATGATTATGATATGATTGACGAAAACCCCGatataaaaaactttcaactCTTATCATTTCCGCAAGAAAATTTAaTCCATACCTTTCGAAAAAGTGACTTGAATCATCCACGTGAATTTAATAACGATGTTGAATTAGTCGTTGAATGTGAAGACGTCAAGCCCAACATTAATTTATTAGCAGttaagaaaattgaagaagatTCTCAAAATGGCTTGAAGGACATGGAGTACAATGATGTTTATACAACTCAAAACTTGATTAAAATGGAACCAACGGAGGAAGTACAACATGCATCTTTTGTGAACACCGCAGAAGAatcgaatttgaattcagACTGTAAACGtggcgagcaaaaaaaaacaagaaaaataacgaaagAGTTGAGCAacgaacataacctcaaaagaCACCGAGGTACGGTGCATAATGATACAAATTACGGATGTGAAACATGCGGAAAATATTTCTCAACTAACAGCAGTCTGAAAAGGCATATCCTATCAATACATCATGGTATTACCCActcatgtgataaatgcggaAAGTCTTTTACTCAAAAAGGTTATCTCAAAGGCCACATTGAGGCAGTCCACAAGGGCTTCACAAATGCCTGTGATATATGTGGAAGGACATTCTCAGACAAGAGTAAACTCCgaaaacacatcgattcgatgcataatggtgtcagaTATGCATGCGACATTTGCGGAAATGTGTTCAAACGAAAAGAGgatctcaaaacccacatcgagTCGGTGCATCAAAAAATCAGGCATccatgtgatatatgccaaaagacattctcacaaaaaggttatctcaaaactcacatcgattcggtgcacaacAAAATCAcgcatgcatgtgatatatgccaaGAGACATTCACACAGAAAACGaatctcaaaacccacatcgattcggtacatcgtaaaataaggcatgcatgcgatatatgccaaaagacacTCTCAGACAGGAATAGTCTCAGAAAgcacatcgattcagtgcataataaaatcacgcATCCATGCGATACATGTCGAAAGTCATTCACAACTAAAGTTAGTCTCAGaattcacatcgattcagtgcattataaaatcatgcatccatgtgatatatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagtCACGCATGTAATATTTGCGGAAATGTTTTTAAACGAAGAGgcaatctcaaaactcacgtcGATTCGGTGCATCAAAAATTCACGCATccatgtgatatatgccaaGAGATATTCACACAGAAAACGAATCTCAAAAGACACATCAATTCGGTACATCGTAAAATCACTTAtccatgcgatatatgccagaaaatatttacacaaaaagatATTCTCAAAAGCCACATCGAGTctgtgcataatggtgtcagaCATGCATGCGACATTTGCGAGAATATCTATAAACATAGAAGCgatctcaataaacacatcgattcgaaGCATAATGGTGTTAGACATGCATGTGATGTATGCCAAAAGACGTTCGCACAAAAAATTAGTCTCAAAGTCCATATCcattcggtgcataataaaattattacgtaCACATGTGATATGTGCCAAAAGACGTTCTCATACAAAAGTGGtctaaaaaaacacatcgtttcgatgcataatggtgttggacatgcgtgtggtatatga
- Protein Sequence
- MESSGSFNCAVRVKEECYDESRGKNDYDMIDENPDIKNFQLLSFPQENLIHTFRKSDLNHPREFNNDVELVVECEDVKPNINLLAVKKIEEDSQNGLKDMEYNDVYTTQNLIKMEPTEEVQHASFVNTAEESNLNSDCKRGEQKKTRKITKELSNEHNLKRHRGTVHNDTNYGCETCGKYFSTNSSLKRHILSIHHGITHSCDKCGKSFTQKGYLKGHIEAVHKGFTNACDICGRTFSDKSKLRKHIDSMHNGVRYACDICGNVFKRKEDLKTHIESVHQKIRHPCDICQKTFSQKGYLKTHIDSVHNKITHACDICQETFTQKTNLKTHIDSVHRKIRHACDICQKTLSDRNSLRKHIDSVHNKITHPCDTCRKSFTTKVSLRIHIDSVHYKIMHPCDICQKTFSNRSNLRKHIESVHNGVSHACNICGNVFKRRGNLKTHVDSVHQKFTHPCDICQEIFTQKTNLKRHINSVHRKITYPCDICQKIFTQKDILKSHIESVHNGVRHACDICENIYKHRSDLNKHIDSKHNGVRHACDVCQKTFAQKISLKVHIHSVHNKIITYTCDMCQKTFSYKSGLKKHIVSMHNGVGHACGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485075; iTF_01485824;
- 90% Identity
- iTF_01485075; iTF_01485824;
- 80% Identity
- iTF_01485075; iTF_01485824;