Tpre008377.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1103918-1106027[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0047 2 8.1 0.0 13 48 148 182 142 187 0.82 2 7 0.3 1.3e+02 2.3 0.1 26 49 188 211 186 216 0.92 3 7 0.0052 2.2 8.0 0.0 27 48 217 238 212 241 0.91 4 7 0.03 13 5.5 0.2 26 49 272 295 245 298 0.94 5 7 0.094 39 4.0 0.0 26 49 412 435 394 440 0.87 6 7 0.066 27 4.5 0.1 27 48 441 462 438 465 0.90 7 7 0.00072 0.3 10.7 0.1 11 48 507 546 501 549 0.82
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATCCTGCTgttagagtgaaaggCGAGCCTTGTGATGTTTTGCTTACccaaaataattatgaaaccATCGACGAAATACCCGTAACTGAAAATGTGAAGTACGAAAGGTTTCTTCAAGAAAACTGGACCCAAgagtttcaagaaaaaaagcttgaCGACATTCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGATGAGTATAAAACCAGAAGCACAATTAAACTAGAAACTGTCGGGTCAgtgaagaaagaaattttgagGGAAGgagaaaatgatttaaatttaggACGTGGACTCAgcaagaaaaatgaaacaggAAGTGTTTCAAAAGAGATTAACTATGATCATTGGCTAAAAACTCACACTGAACGAGCCCGTAATGGCAATATTACAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTAATCTCAATAggcacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaatACGTTCTCAGAGAAGAAAAGTCTCAGaattcacatcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGCAGTAATCTCAGAAAGCACATCGAGTCGGTGCATAATAGTGTCAGATATGaatgcgatatatgccaaaagacattctcagatAAGGGTTATCTAaaaacccacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaagacattctcagacaAGAATAATCTTAGAAATCACATCAATTCgatgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTTATCTCAGAAATCACATCcattcggtgcataataaaGTCAGATATGCATGCGATTTATGCGGAAATGTTTATAAACGAAGAAATGTTCTTAATATACACATCAATTCGGTGCATCATAAAATAAGGCATGCATGCGATACATGCCAAAATACGTTCTCAACGAAGAAAagtctcaaaaaacatattgaTTCCGTGCACAATCGAGTCCGATATGCGTGCAacatatgccaaaagacattctcagagAAAGGCACTCTCAAAACTCACGTCGattcgatgcataatggtgtcagtCACGCATGCGATATTTGCAGAAATGTTTTTAAACGAAGAGGCgatctcaaaactcacgtcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagaTATAAATGCGATGTTTGCGGAAAGAATTTCACAAGCAAAAGTAATCTCCAAACCCATATCGATGCGGAACACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatttaaatatcaaacTGAAATCCCTagacataaaaaattgtcgcACAATGGTATCATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCCCTCGCTCAATAAGTCCTAa
- Protein Sequence
- METSGLFNPAVRVKGEPCDVLLTQNNYETIDEIPVTENVKYERFLQENWTQEFQEKKLDDIQIELECTDMKPNLLAVAKIEDYSPSQWPDSDEYKTRSTIKLETVGSVKKEILREGENDLNLGRGLSKKNETGSVSKEINYDHWLKTHTERARNGNITPACDICGKVFKLRGNLNRHIDSVHRKIRHACDICQNTFSEKKSLRIHIDSVHYKIMHPCDVCQKTFSNSSNLRKHIESVHNSVRYECDICQKTFSDKGYLKTHIDSVHRKIRHACDICQKTFSDKNNLRNHINSMHYKIMHPCDVCQKTFSNRSYLRNHIHSVHNKVRYACDLCGNVYKRRNVLNIHINSVHHKIRHACDTCQNTFSTKKSLKKHIDSVHNRVRYACNICQKTFSEKGTLKTHVDSMHNGVSHACDICRNVFKRRGDLKTHVDSVHYKIMHPCDVCQKTFSNRSNLRKHIESVHNGVRYKCDVCGKNFTSKSNLQTHIDAEHNGITHACDFCEKKFKYQTEIPRHKKLSHNGIIHSCETCGKTFGQKRNLRAHIDMAHPSLNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484879;
- 90% Identity
- iTF_01484879;
- 80% Identity
- iTF_01484879;