Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1103918-1106027[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 2.3 7.8 0.4 19 44 161 183 147 183 0.91

2 14 0.58 43 3.7 0.7 19 43 189 210 185 211 0.89

3 14 0.00018 0.013 15.0 1.2 19 44 217 239 212 239 0.92

4 14 0.08 5.9 6.5 0.3 18 43 244 266 240 271 0.81

5 14 0.00056 0.041 13.4 1.7 19 43 273 294 267 295 0.94

6 14 0.28 21 4.8 2.6 19 44 301 323 297 323 0.92

7 14 0.31 23 4.6 1.4 19 43 329 350 325 356 0.74

8 14 0.39 29 4.3 1.2 19 44 357 379 351 379 0.92

9 14 0.0023 0.17 11.4 0.4 19 44 385 407 381 407 0.88

10 14 0.7 52 3.5 0.3 19 39 413 430 410 440 0.75

11 14 0.0013 0.099 12.2 2.1 19 44 441 463 427 463 0.90

12 14 0.0043 0.32 10.5 0.3 18 43 468 490 466 491 0.91

13 14 0.52 39 3.9 0.2 19 30 497 508 494 523 0.85

14 14 0.065 4.8 6.8 0.3 18 44 524 547 515 547 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	2.3	7.8	0.4	19	44	161	183	147	183	0.91
2	14	0.58	43	3.7	0.7	19	43	189	210	185	211	0.89
3	14	0.00018	0.013	15.0	1.2	19	44	217	239	212	239	0.92
4	14	0.08	5.9	6.5	0.3	18	43	244	266	240	271	0.81
5	14	0.00056	0.041	13.4	1.7	19	43	273	294	267	295	0.94
6	14	0.28	21	4.8	2.6	19	44	301	323	297	323	0.92
7	14	0.31	23	4.6	1.4	19	43	329	350	325	356	0.74
8	14	0.39	29	4.3	1.2	19	44	357	379	351	379	0.92
9	14	0.0023	0.17	11.4	0.4	19	44	385	407	381	407	0.88
10	14	0.7	52	3.5	0.3	19	39	413	430	410	440	0.75
11	14	0.0013	0.099	12.2	2.1	19	44	441	463	427	463	0.90
12	14	0.0043	0.32	10.5	0.3	18	43	468	490	466	491	0.91
13	14	0.52	39	3.9	0.2	19	30	497	508	494	523	0.85
14	14	0.065	4.8	6.8	0.3	18	44	524	547	515	547	0.92

Sequence Information

Coding Sequence: ATGGAAACTAGTGGTTTATTCAATCCTGCTgttagagtgaaaggCGAGCCTTGTGATGTTTTGCTTACccaaaataattatgaaaccATCGACGAAATACCCGTAACTGAAAATGTGAAGTACGAAAGGTTTCTTCAAGAAAACTGGACCCAAgagtttcaagaaaaaaagcttgaCGACATTCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGATGAGTATAAAACCAGAAGCACAATTAAACTAGAAACTGTCGGGTCAgtgaagaaagaaattttgagGGAAGgagaaaatgatttaaatttaggACGTGGACTCAgcaagaaaaatgaaacaggAAGTGTTTCAAAAGAGATTAACTATGATCATTGGCTAAAAACTCACACTGAACGAGCCCGTAATGGCAATATTACAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTAATCTCAATAggcacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaatACGTTCTCAGAGAAGAAAAGTCTCAGaattcacatcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGCAGTAATCTCAGAAAGCACATCGAGTCGGTGCATAATAGTGTCAGATATGaatgcgatatatgccaaaagacattctcagatAAGGGTTATCTAaaaacccacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaagacattctcagacaAGAATAATCTTAGAAATCACATCAATTCgatgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTTATCTCAGAAATCACATCcattcggtgcataataaaGTCAGATATGCATGCGATTTATGCGGAAATGTTTATAAACGAAGAAATGTTCTTAATATACACATCAATTCGGTGCATCATAAAATAAGGCATGCATGCGATACATGCCAAAATACGTTCTCAACGAAGAAAagtctcaaaaaacatattgaTTCCGTGCACAATCGAGTCCGATATGCGTGCAacatatgccaaaagacattctcagagAAAGGCACTCTCAAAACTCACGTCGattcgatgcataatggtgtcagtCACGCATGCGATATTTGCAGAAATGTTTTTAAACGAAGAGGCgatctcaaaactcacgtcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagaTATAAATGCGATGTTTGCGGAAAGAATTTCACAAGCAAAAGTAATCTCCAAACCCATATCGATGCGGAACACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatttaaatatcaaacTGAAATCCCTagacataaaaaattgtcgcACAATGGTATCATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCCCTCGCTCAATAAGTCCTAa
Protein Sequence: METSGLFNPAVRVKGEPCDVLLTQNNYETIDEIPVTENVKYERFLQENWTQEFQEKKLDDIQIELECTDMKPNLLAVAKIEDYSPSQWPDSDEYKTRSTIKLETVGSVKKEILREGENDLNLGRGLSKKNETGSVSKEINYDHWLKTHTERARNGNITPACDICGKVFKLRGNLNRHIDSVHRKIRHACDICQNTFSEKKSLRIHIDSVHYKIMHPCDVCQKTFSNSSNLRKHIESVHNSVRYECDICQKTFSDKGYLKTHIDSVHRKIRHACDICQKTFSDKNNLRNHINSMHYKIMHPCDVCQKTFSNRSYLRNHIHSVHNKVRYACDLCGNVYKRRNVLNIHINSVHHKIRHACDTCQNTFSTKKSLKKHIDSVHNRVRYACNICQKTFSEKGTLKTHVDSMHNGVSHACDICRNVFKRRGDLKTHVDSVHYKIMHPCDVCQKTFSNRSNLRKHIESVHNGVRYKCDVCGKNFTSKSNLQTHIDAEHNGITHACDFCEKKFKYQTEIPRHKKLSHNGIIHSCETCGKTFGQKRNLRAHIDMAHPSLNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485114; iTF_01485823;
90% Identity: iTF_01485114; iTF_01485823;
80% Identity: iTF_01485114; iTF_01485823;