Tpre008354.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1097521-1099488[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.5 1.8e+03 -1.4 0.1 24 48 159 182 142 187 0.75 2 9 0.098 41 3.9 0.1 26 48 188 210 182 212 0.89 3 9 0.55 2.3e+02 1.5 0.0 25 48 215 238 210 242 0.89 4 9 8.2 3.4e+03 -2.3 0.0 26 46 244 264 239 270 0.80 5 9 0.00093 0.39 10.4 0.0 26 48 272 294 254 297 0.89 6 9 1.6 6.8e+02 -0.0 0.0 26 48 300 322 297 325 0.87 7 9 0.073 30 4.3 0.1 26 48 328 350 324 356 0.89 8 9 0.0086 3.6 7.3 0.4 26 48 356 378 351 381 0.91 9 9 0.0018 0.73 9.5 0.1 18 48 404 434 389 437 0.82
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATCCTGCTgttagagtgaaagtCGAGCCTTGTGATGTTTTGCTTAcccaaaataattataaaaccaTCGACGAGATACCCGTAACTGAAAATGTCAAGTACGAAGGGTTTCTTCAAGAAAACTGGATCCAAGAGTTTCAAGAAAATAAGCTTGACGACATTCAAATCGAATTGGAATGTACAGACATGAAGGCCAATTTATTGGCGGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGGTGAGTATGAAACCAGAAGCACAATAAAAGTAGAAACTGTTGGGTCTgtgaagaaagaaattttgagggaaggagaaaaagatttaaatttaGGACGTGGActcagcgagaaaaataaaaaaagaagtgttTTGAAAGGGATGAACTATAAACATAGGCTAATAACTCACATTGAATCAGCTCGTAACGGCAATATCAAACCTGCATGTGATGTATGTGGAAAATCATTCGGATATAAGAGTCATCTCCAaagacacatcgattcggtacatcgtaaaataaggcatgcatgtgatatatgccaaaagacattcacacagaAAACGAATCTCAAAGTCCACGTCAATTcggtacataataaaattactcataCATGCGATGTATGCCAAAATACGTTCTCAAAGAAGGAAagtctcaaaaaacatattgaTTCCGTGCACAATCGAGTCCGACATGCGtgtgatatatgccaaaagacattctcagagAAAGGCactctcaaaactcacatcgattcgattcATAATGGTGTCAGTCACGCATGTAATATTTGCGGAAatgtttttaaacaaaaaggcaatctcaaaaagcacatcgattcggtgcatcgtAAAATAAGGCATGCATGCGacatatgccaaaagacattcgcACAGAAAAAGAGTCTCAtaattcacatcgattcgatgcataatggtgtcagtCACGCATGCGATATTTGCAGAAATGTTTTTAAACGAAGAGGCGatctcaaaaagcacatcgattcggtgcatcgtAAAATAAGGCATGCATGCAACATATGCCAAAATACGTTCTCAAACAGGAGTAATCTCAGAAAGCACATCGAGTCGGTGCACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatacaaatatcaAACTCATCTTAATAAACATGTCAAATCCTCGCATAGTGGTATCATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCCCTCGCTCAATAAGTCccaataa
- Protein Sequence
- METSGLFNPAVRVKVEPCDVLLTQNNYKTIDEIPVTENVKYEGFLQENWIQEFQENKLDDIQIELECTDMKANLLAVAKIEDYSPSQWPDSGEYETRSTIKVETVGSVKKEILREGEKDLNLGRGLSEKNKKRSVLKGMNYKHRLITHIESARNGNIKPACDVCGKSFGYKSHLQRHIDSVHRKIRHACDICQKTFTQKTNLKVHVNSVHNKITHTCDVCQNTFSKKESLKKHIDSVHNRVRHACDICQKTFSEKGTLKTHIDSIHNGVSHACNICGNVFKQKGNLKKHIDSVHRKIRHACDICQKTFAQKKSLIIHIDSMHNGVSHACDICRNVFKRRGDLKKHIDSVHRKIRHACNICQNTFSNRSNLRKHIESVHNGITHACDFCEKKYKYQTHLNKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDMAHPSLNKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484931;
- 90% Identity
- iTF_01484931;
- 80% Identity
- iTF_01484931;