Tpre008354.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1097521-1099488[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.16 12 5.5 0.2 19 44 161 183 152 183 0.91 2 10 0.0055 0.41 10.2 1.3 19 44 189 211 185 211 0.94 3 10 0.19 14 5.3 1.0 18 44 216 239 214 239 0.92 4 10 0.049 3.7 7.2 0.8 19 43 245 266 240 267 0.85 5 10 0.0019 0.14 11.7 1.4 19 44 273 295 270 295 0.93 6 10 0.08 6 6.5 0.9 19 44 301 323 297 323 0.93 7 10 0.17 12 5.5 0.5 19 44 329 351 326 355 0.87 8 10 0.00016 0.012 15.1 2.7 19 44 357 379 351 379 0.93 9 10 0.11 8 6.1 3.5 19 44 385 407 383 407 0.90 10 10 0.068 5.1 6.7 0.4 19 44 413 435 410 435 0.93
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATCCTGCTgttagagtgaaagtCGAGCCTTGTGATGTTTTGCTTAcccaaaataattataaaaccaTCGACGAGATACCCGTAACTGAAAATGTCAAGTACGAAGGGTTTCTTCAAGAAAACTGGATCCAAGAGTTTCAAGAAAATAAGCTTGACGACATTCAAATCGAATTGGAATGTACAGACATGAAGGCCAATTTATTGGCGGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGGTGAGTATGAAACCAGAAGCACAATAAAAGTAGAAACTGTTGGGTCTgtgaagaaagaaattttgagggaaggagaaaaagatttaaatttaGGACGTGGActcagcgagaaaaataaaaaaagaagtgttTTGAAAGGGATGAACTATAAACATAGGCTAATAACTCACATTGAATCAGCTCGTAACGGCAATATCAAACCTGCATGTGATGTATGTGGAAAATCATTCGGATATAAGAGTCATCTCCAaagacacatcgattcggtacatcgtaaaataaggcatgcatgtgatatatgccaaaagacattcacacagaAAACGAATCTCAAAGTCCACGTCAATTcggtacataataaaattactcataCATGCGATGTATGCCAAAATACGTTCTCAAAGAAGGAAagtctcaaaaaacatattgaTTCCGTGCACAATCGAGTCCGACATGCGtgtgatatatgccaaaagacattctcagagAAAGGCactctcaaaactcacatcgattcgattcATAATGGTGTCAGTCACGCATGTAATATTTGCGGAAatgtttttaaacaaaaaggcaatctcaaaaagcacatcgattcggtgcatcgtAAAATAAGGCATGCATGCGacatatgccaaaagacattcgcACAGAAAAAGAGTCTCAtaattcacatcgattcgatgcataatggtgtcagtCACGCATGCGATATTTGCAGAAATGTTTTTAAACGAAGAGGCGatctcaaaaagcacatcgattcggtgcatcgtAAAATAAGGCATGCATGCAACATATGCCAAAATACGTTCTCAAACAGGAGTAATCTCAGAAAGCACATCGAGTCGGTGCACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatacaaatatcaAACTCATCTTAATAAACATGTCAAATCCTCGCATAGTGGTATCATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCCCTCGCTCAATAAGTCccaataa
- Protein Sequence
- METSGLFNPAVRVKVEPCDVLLTQNNYKTIDEIPVTENVKYEGFLQENWIQEFQENKLDDIQIELECTDMKANLLAVAKIEDYSPSQWPDSGEYETRSTIKVETVGSVKKEILREGEKDLNLGRGLSEKNKKRSVLKGMNYKHRLITHIESARNGNIKPACDVCGKSFGYKSHLQRHIDSVHRKIRHACDICQKTFTQKTNLKVHVNSVHNKITHTCDVCQNTFSKKESLKKHIDSVHNRVRHACDICQKTFSEKGTLKTHIDSIHNGVSHACNICGNVFKQKGNLKKHIDSVHRKIRHACDICQKTFAQKKSLIIHIDSMHNGVSHACDICRNVFKRRGDLKKHIDSVHRKIRHACNICQNTFSNRSNLRKHIESVHNGITHACDFCEKKYKYQTHLNKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDMAHPSLNKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485817; iTF_01485279;
- 90% Identity
- iTF_01485817; iTF_01485279;
- 80% Identity
- iTF_01485817; iTF_01485279;