Tpre007835.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1133489-1136016[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.1 3.4e+03 -2.2 0.0 21 48 149 176 138 183 0.74 2 12 0.46 1.9e+02 1.7 0.0 22 48 179 205 173 210 0.84 3 12 0.0023 0.95 9.1 0.1 22 46 208 232 202 239 0.84 4 12 0.52 2.2e+02 1.6 0.1 23 44 238 259 234 268 0.85 5 12 0.83 3.4e+02 0.9 0.0 22 48 266 292 261 297 0.83 6 12 1.1 4.6e+02 0.5 0.1 23 46 296 319 292 326 0.82 7 12 0.0088 3.7 7.3 0.0 21 48 381 408 374 413 0.83 8 12 0.58 2.4e+02 1.4 0.0 23 44 412 433 408 443 0.84 9 12 1.9 8e+02 -0.2 0.0 22 48 440 466 435 468 0.83 10 12 4.3 1.8e+03 -1.4 0.0 27 48 474 495 471 497 0.86 11 12 5.6e-05 0.023 14.3 0.1 20 48 496 524 492 530 0.89 12 12 0.43 1.8e+02 1.9 0.0 26 48 531 553 525 556 0.83
Sequence Information
- Coding Sequence
- ATGATGGAGAGCTGCAATGACGTAGTTagAATAAAGGAAGAGTTGAGCGATACTTTGACGAACGCAGGTGAAGATTATGTTTTCAATTTGGTAAATTCTTATAAAGCCGAAAACTTGGAAACGATCCCGTGTTATACAgtaaAACATGCGAATGAAACTACAGCGCTACACGAGAggttagataaaaaaatattcatcgattttgAGTGCCAACATATTAAACCTGAACTGAAGGCTCAATCAACAATCAACAGCAAAtttgagtataaaaatattcaacctGTTGTGAAAAAGGAAAACCAAAATTCGATCAAATACACGAATGATAAAAGcctaataattttgattaaaaagggatttaattataatgaaaattgccAATCGATTTCTAACTCCTGTATAGCATCGACCGGACATGAGAAACTAccgaattttgaaaaaagtcgtAATAAACCCTTTGATTGCGACATTtaccacaaatcatttgggcaAACAGTTACCCTCAAAAATCACacaaatgcagtacataatcgaaacAAACcattcgaatgtgagatttgtcacaaatcatttggaataCAATCGAATCTCAAAGTACACGTAAATTCagtgcataaaaaaagtaaacccttcgaatgcgatatttgtcatagatcatttcgacaaaaaagtaacctcaaagatcacaaACAGGCAGTACACGATCgcatcaaacccttcgaatgtgatatttgtcaaaaaacatttacaaGAAAACAAAATCTTAAAAGCCACAGAataacagtacatgatcgtaagaaacctttcgaatgtgatatcTGTCACAAATCATATGGACTAAAATCGAATCTCAAATTACACGTAAAAACAGTGCATAATaggagcaaaccttttgaatgcgatatttgtcaaaaatcattttcactcAAAAGTGTCCTCAAAAGACATATAAATGacgtacatgatcgtagcaaaccctttgagtgtgagagTTGccgcaaatcatttggataccagcaAACCTTGAAAAATCACATTATTCAATTTCATGATCTAGACAAACTCCTGGAATGtcagatttgtcacaaatcatttggactaaaatcgaAACTCAAACTACACGTGAATTCAgcgcataaaaaaagtaaaccattcgaatgtgatatttgtcatagattatttggacaaaaaagtaaccttAAAAGTCATATAattacagtacatgatcgtaaaaAACCATTCAAGTGtgatttttgtcaaaaatcatttgcagaaaaatcaaatcttaAAAGGCACAGAataacagtacatgatcgtaagaaacccttcgaatgtgatatctgtcacaaatcatttggatacaaaagtTACCTTAAAAATCACGTAAATGTAGTGCATAATCGTATCAAaacctttgaatgtgaaatttgtcacaaatcattttcattcaagagCAATCTCAATACACACGttaatacagtacataatagtagcaaacccttccagtgtgagatttgtcataaatcatttggacagaAACGAAACTTTAAACGTCACGTAGATACAGTACACAATCGCAACAAACCCTTTGAACgtgagatttgccacaaatcatttggacagaAACAAAACTTTGAACGTCACGTAGATACAATACACAATCAAGAGGCACATAATTGGGGTACATAA
- Protein Sequence
- MMESCNDVVRIKEELSDTLTNAGEDYVFNLVNSYKAENLETIPCYTVKHANETTALHERLDKKIFIDFECQHIKPELKAQSTINSKFEYKNIQPVVKKENQNSIKYTNDKSLIILIKKGFNYNENCQSISNSCIASTGHEKLPNFEKSRNKPFDCDIYHKSFGQTVTLKNHTNAVHNRNKPFECEICHKSFGIQSNLKVHVNSVHKKSKPFECDICHRSFRQKSNLKDHKQAVHDRIKPFECDICQKTFTRKQNLKSHRITVHDRKKPFECDICHKSYGLKSNLKLHVKTVHNRSKPFECDICQKSFSLKSVLKRHINDVHDRSKPFECESCRKSFGYQQTLKNHIIQFHDLDKLLECQICHKSFGLKSKLKLHVNSAHKKSKPFECDICHRLFGQKSNLKSHIITVHDRKKPFKCDFCQKSFAEKSNLKRHRITVHDRKKPFECDICHKSFGYKSYLKNHVNVVHNRIKTFECEICHKSFSFKSNLNTHVNTVHNSSKPFQCEICHKSFGQKRNFKRHVDTVHNRNKPFEREICHKSFGQKQNFERHVDTIHNQEAHNWGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484938;
- 90% Identity
- iTF_01484938;
- 80% Identity
- iTF_01484938;