Tpre007835.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1133489-1136016[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0049 0.36 10.4 2.7 4 44 169 206 166 206 0.91 2 12 0.084 6.2 6.4 2.9 1 38 195 229 195 235 0.87 3 12 0.0068 0.51 9.9 2.0 1 43 224 263 224 264 0.80 4 12 0.042 3.1 7.4 2.8 17 44 269 293 263 293 0.89 5 12 0.027 2 8.0 0.2 17 43 298 321 294 322 0.90 6 12 0.25 19 4.9 1.3 2 43 312 350 311 351 0.88 7 12 0.66 49 3.5 3.5 15 44 354 380 349 380 0.85 8 12 0.0045 0.33 10.5 3.3 1 43 369 408 369 409 0.92 9 12 0.017 1.2 8.7 0.3 17 43 414 437 409 438 0.85 10 12 0.3 22 4.7 1.8 17 43 443 466 434 467 0.82 11 12 0.0067 0.5 9.9 4.6 4 44 459 496 456 496 0.84 12 12 0.0096 0.72 9.4 0.5 18 44 502 525 497 525 0.90
Sequence Information
- Coding Sequence
- ATGATGGAGAGCTGCAATGACGTAGTTagAATAAAGGAAGAGTTGAGCGATACTTTGACGAACGCAGGTGAAGATTATGTTTTCAATTTGGTAAATTCTTATAAAGCCGAAAACTTGGAAACGATCCCGTGTTATACAgtaaAACATGCGAATGAAACTACAGCGCTACACGAGAggttagataaaaaaatattcatcgattttgAGTGCCAACATATTAAACCTGAACTGAAGGCTCAATCAACAATCAACAGCAAAtttgagtataaaaatattcaacctGTTGTGAAAAAGGAAAACCAAAATTCGATCAAATACACGAATGATAAAAGcctaataattttgattaaaaagggatttaattataatgaaaattgccAATCGATTTCTAACTCCTGTATAGCATCGACCGGACATGAGAAACTAccgaattttgaaaaaagtcgtAATAAACCCTTTGATTGCGACATTtaccacaaatcatttgggcaAACAGTTACCCTCAAAAATCACacaaatgcagtacataatcgaaacAAACcattcgaatgtgagatttgtcacaaatcatttggaataCAATCGAATCTCAAAGTACACGTAAATTCagtgcataaaaaaagtaaacccttcgaatgcgatatttgtcatagatcatttcgacaaaaaagtaacctcaaagatcacaaACAGGCAGTACACGATCgcatcaaacccttcgaatgtgatatttgtcaaaaaacatttacaaGAAAACAAAATCTTAAAAGCCACAGAataacagtacatgatcgtaagaaacctttcgaatgtgatatcTGTCACAAATCATATGGACTAAAATCGAATCTCAAATTACACGTAAAAACAGTGCATAATaggagcaaaccttttgaatgcgatatttgtcaaaaatcattttcactcAAAAGTGTCCTCAAAAGACATATAAATGacgtacatgatcgtagcaaaccctttgagtgtgagagTTGccgcaaatcatttggataccagcaAACCTTGAAAAATCACATTATTCAATTTCATGATCTAGACAAACTCCTGGAATGtcagatttgtcacaaatcatttggactaaaatcgaAACTCAAACTACACGTGAATTCAgcgcataaaaaaagtaaaccattcgaatgtgatatttgtcatagattatttggacaaaaaagtaaccttAAAAGTCATATAattacagtacatgatcgtaaaaAACCATTCAAGTGtgatttttgtcaaaaatcatttgcagaaaaatcaaatcttaAAAGGCACAGAataacagtacatgatcgtaagaaacccttcgaatgtgatatctgtcacaaatcatttggatacaaaagtTACCTTAAAAATCACGTAAATGTAGTGCATAATCGTATCAAaacctttgaatgtgaaatttgtcacaaatcattttcattcaagagCAATCTCAATACACACGttaatacagtacataatagtagcaaacccttccagtgtgagatttgtcataaatcatttggacagaAACGAAACTTTAAACGTCACGTAGATACAGTACACAATCGCAACAAACCCTTTGAACgtgagatttgccacaaatcatttggacagaAACAAAACTTTGAACGTCACGTAGATACAATACACAATCAAGAGGCACATAATTGGGGTACATAA
- Protein Sequence
- MMESCNDVVRIKEELSDTLTNAGEDYVFNLVNSYKAENLETIPCYTVKHANETTALHERLDKKIFIDFECQHIKPELKAQSTINSKFEYKNIQPVVKKENQNSIKYTNDKSLIILIKKGFNYNENCQSISNSCIASTGHEKLPNFEKSRNKPFDCDIYHKSFGQTVTLKNHTNAVHNRNKPFECEICHKSFGIQSNLKVHVNSVHKKSKPFECDICHRSFRQKSNLKDHKQAVHDRIKPFECDICQKTFTRKQNLKSHRITVHDRKKPFECDICHKSYGLKSNLKLHVKTVHNRSKPFECDICQKSFSLKSVLKRHINDVHDRSKPFECESCRKSFGYQQTLKNHIIQFHDLDKLLECQICHKSFGLKSKLKLHVNSAHKKSKPFECDICHRLFGQKSNLKSHIITVHDRKKPFKCDFCQKSFAEKSNLKRHRITVHDRKKPFECDICHKSFGYKSYLKNHVNVVHNRIKTFECEICHKSFSFKSNLNTHVNTVHNSSKPFQCEICHKSFGQKRNFKRHVDTVHNRNKPFEREICHKSFGQKQNFERHVDTIHNQEAHNWGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485135; iTF_01485816;
- 90% Identity
- iTF_01485135; iTF_01485816;
- 80% Identity
- iTF_01485135; iTF_01485816;