Tpre012254.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1179470-1181896[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.24 98 2.7 0.0 26 48 272 294 266 298 0.90 2 8 0.018 7.6 6.2 0.0 25 48 299 322 294 326 0.90 3 8 0.24 98 2.7 0.0 26 48 328 350 324 353 0.89 4 8 0.025 10 5.8 0.1 25 48 384 407 376 411 0.89 5 8 0.027 11 5.7 0.0 26 48 413 435 408 438 0.89 6 8 0.042 17 5.1 0.0 25 48 496 519 491 524 0.88 7 8 0.028 12 5.6 0.0 26 48 525 547 521 550 0.89 8 8 5 2.1e+03 -1.6 0.0 25 48 608 631 601 633 0.85
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATAAGTGATTGTGCTCCGAGGGTGAAGGAGGAGCCTCGCGATGAAATGATGGACGAGAAACCCGATTTGAAGAACTTTCCACTTTTACCCTTTCCGCGAGAAAATTCGACTCACAGCTTCCAAAAATGTGACGAAAATCATCAACATAGACTTCTAGACGGAGTGGAAGTAGTTATTGAATGTGAATATGCGAAGCCCAACATTAAATCATTAGCAGTTGACAAAATTGAGGAAGATTCCCTAAATAACTTAAGGAATGCACAAGGTAGCAATgattatcaaaatcaaaacaCAATTAAAATAGAATCAGCGGAAGAAGTGAAACACGAATATATTTGTGATACTAAAGAAcactttaatttaaatcttGACTGTAAGCTAAATTACGATATGGATATAGTTTTTGAATGTGAAGATGTCAAGCCCAATATGGATTATCcagtaattaaacaaattggAGATGGTTATAAAAACCaaaacgaaattaaaataGGGACCTCGGGGAAAGTGAAACATGAATTTGTTGGCGACGCTGCAGAAGATTCGAATTTGAATATCGACTGTGAAATTGcccaagaaaataaaaaaagaagaatcacaaaaaagtttaacaacGCACAAACGTCTCACGCATGcgaaatatgcggaaagaaatattcaaataagGCTAACGTGAATTTGCACATTAAATCATCCCATCGAGGTATTATTCACCCGTGTGATCTATGTGGTAAGACGTATTCGCGAAAAGGTaatctcaaatctcacattagCGCCGTACACAATGGTACCAAGCacaaatgtgatatttgcggcaagacattttcacaaagaTACAATCTCAAAGCCCACATCGATACTATACATAATGGCACCAAACATACATGTGATGtatgcggaaagtcatttaaacagaagaaaaatcttaaaattcacGTCGATACGGTGCACAATGGCACCAAACATATATGTGACAtatgcggcaagacattttcacaaagatccaatctcaaaacccacatcgatagaatacataatggtatcaaacatacatgtgatatttgtggaaaacAATTTACAAGTAAGCAGTATGTTGAAGTTCACATCGATTCTGTGCACAATAATGGCACCAAACACACATGTGCTATTTGtggcaagacattttcacaaagaTGCAATCTCAAAACACACATCGATACAATACATAATGGCACGAAACATACATGTGATGtatgcggaaagtcatttaaacagaagaaaaatcttaaaattcacGTCGATTCATTGCATACTGGTATCAAgcataaatgtgatatttgcggaagaCAATTTTCAAGTAAGAATTATCTTGAAGTTCACATCGATACTGTGCACAATGGTATCAAACATACATGTGCTGTTTGTGGGaaacaattttcaagtaaGAATTATCTCGAATGTCACATCGATACGGTGCATAATGGCACCAAACATACATGTGACAtatgcggcaagacattttcacaaagaTCCAATCTCAAAACACACATCGGTACAATACATATTGGCACCAAACATACATGTGATGtatgcggaaagtcatttaaacagaagaaaaatcttaaaattcacGTCGATTCATTGCATACTGGTATCAAgcataaatgtgatatttgtggaagACAATTTTCAAGTAAGAATTATCTTGAAGTTCACATCGATACTGTGCACAATGGTATCAAACATACATGTGAcgtatgcggaaagaaattctcagGGAAAAGTTATCTCAAAACCCATATCGAGACGGTGCATTGTAAAATCACGCACACATGCGATACATGCGGaagaacattttcaaaaaagtttaatctGAAAGCCCACATCGATAAGATACATAACTCACTCATTAAAACTAAATGA
- Protein Sequence
- MESSDISDCAPRVKEEPRDEMMDEKPDLKNFPLLPFPRENSTHSFQKCDENHQHRLLDGVEVVIECEYAKPNIKSLAVDKIEEDSLNNLRNAQGSNDYQNQNTIKIESAEEVKHEYICDTKEHFNLNLDCKLNYDMDIVFECEDVKPNMDYPVIKQIGDGYKNQNEIKIGTSGKVKHEFVGDAAEDSNLNIDCEIAQENKKRRITKKFNNAQTSHACEICGKKYSNKANVNLHIKSSHRGIIHPCDLCGKTYSRKGNLKSHISAVHNGTKHKCDICGKTFSQRYNLKAHIDTIHNGTKHTCDVCGKSFKQKKNLKIHVDTVHNGTKHICDICGKTFSQRSNLKTHIDRIHNGIKHTCDICGKQFTSKQYVEVHIDSVHNNGTKHTCAICGKTFSQRCNLKTHIDTIHNGTKHTCDVCGKSFKQKKNLKIHVDSLHTGIKHKCDICGRQFSSKNYLEVHIDTVHNGIKHTCAVCGKQFSSKNYLECHIDTVHNGTKHTCDICGKTFSQRSNLKTHIGTIHIGTKHTCDVCGKSFKQKKNLKIHVDSLHTGIKHKCDICGRQFSSKNYLEVHIDTVHNGIKHTCDVCGKKFSGKSYLKTHIETVHCKITHTCDTCGRTFSKKFNLKAHIDKIHNSLIKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484875;
- 90% Identity
- iTF_01484875;
- 80% Identity
- iTF_01484875;