Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1103918-1106027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.3e-06 8.6e-05 22.3 0.1 3 23 161 182 160 182 0.95

2 14 0.0011 0.018 15.0 0.7 1 23 187 210 187 210 0.94

3 14 2.4e-07 3.9e-06 26.5 1.3 1 23 215 238 215 238 0.95

4 14 9.2e-07 1.5e-05 24.7 0.4 1 23 243 266 243 266 0.96

5 14 1.1e-06 1.8e-05 24.4 1.9 1 23 271 294 271 294 0.95

6 14 1e-05 0.00017 21.4 3.6 1 23 299 322 299 322 0.95

7 14 0.0017 0.027 14.4 0.4 1 23 327 350 327 351 0.96

8 14 0.00031 0.005 16.7 2.6 1 23 355 378 355 378 0.94

9 14 3.4e-05 0.00056 19.7 0.5 1 23 383 406 383 406 0.94

10 14 0.001 0.016 15.1 0.7 1 23 411 434 411 434 0.93

11 14 3.2e-07 5.2e-06 26.1 1.5 1 23 439 462 439 462 0.95

12 14 1e-07 1.7e-06 27.6 0.4 1 23 467 490 467 490 0.93

13 14 0.71 12 6.1 2.8 1 23 495 518 495 518 0.88

14 14 2.7e-06 4.3e-05 23.2 0.9 1 23 523 546 523 546 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.3e-06	8.6e-05	22.3	0.1	3	23	161	182	160	182	0.95
2	14	0.0011	0.018	15.0	0.7	1	23	187	210	187	210	0.94
3	14	2.4e-07	3.9e-06	26.5	1.3	1	23	215	238	215	238	0.95
4	14	9.2e-07	1.5e-05	24.7	0.4	1	23	243	266	243	266	0.96
5	14	1.1e-06	1.8e-05	24.4	1.9	1	23	271	294	271	294	0.95
6	14	1e-05	0.00017	21.4	3.6	1	23	299	322	299	322	0.95
7	14	0.0017	0.027	14.4	0.4	1	23	327	350	327	351	0.96
8	14	0.00031	0.005	16.7	2.6	1	23	355	378	355	378	0.94
9	14	3.4e-05	0.00056	19.7	0.5	1	23	383	406	383	406	0.94
10	14	0.001	0.016	15.1	0.7	1	23	411	434	411	434	0.93
11	14	3.2e-07	5.2e-06	26.1	1.5	1	23	439	462	439	462	0.95
12	14	1e-07	1.7e-06	27.6	0.4	1	23	467	490	467	490	0.93
13	14	0.71	12	6.1	2.8	1	23	495	518	495	518	0.88
14	14	2.7e-06	4.3e-05	23.2	0.9	1	23	523	546	523	546	0.95

Sequence Information

Coding Sequence: ATGGAAACTAGTGGTTTATTCAATCCTGCTgttagagtgaaaggCGAGCCTTGTGATGTTTTGCTTACccaaaataattatgaaaccATCGACGAAATACCCGTAACTGAAAATGTGAAGTACGAAAGGTTTCTTCAAGAAAACTGGACCCAAgagtttcaagaaaaaaagcttgaCGACATTCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGATGAGTATAAAACCAGAAGCACAATTAAACTAGAAACTGTCGGGTCAgtgaagaaagaaattttgagGGAAGgagaaaatgatttaaatttaggACGTGGACTCAgcaagaaaaatgaaacaggAAGTGTTTCAAAAGAGATTAACTATGATCATTGGCTAAAAACTCACACTGAACGAGCCCGTAATGGCAATATTACAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTAATCTCAATAggcacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaatACGTTCTCAGAGAAGAAAAGTCTCAGaattcacatcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGCAGTAATCTCAGAAAGCACATCGAGTCGGTGCATAATAGTGTCAGATATGaatgcgatatatgccaaaagacattctcagatAAGGGTTATCTAaaaacccacatcgattcggtgcatcgtaaaataagacatgcatgcgatatatgccaaaagacattctcagacaAGAATAATCTTAGAAATCACATCAATTCgatgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTTATCTCAGAAATCACATCcattcggtgcataataaaGTCAGATATGCATGCGATTTATGCGGAAATGTTTATAAACGAAGAAATGTTCTTAATATACACATCAATTCGGTGCATCATAAAATAAGGCATGCATGCGATACATGCCAAAATACGTTCTCAACGAAGAAAagtctcaaaaaacatattgaTTCCGTGCACAATCGAGTCCGATATGCGTGCAacatatgccaaaagacattctcagagAAAGGCACTCTCAAAACTCACGTCGattcgatgcataatggtgtcagtCACGCATGCGATATTTGCAGAAATGTTTTTAAACGAAGAGGCgatctcaaaactcacgtcgattcggtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagaTATAAATGCGATGTTTGCGGAAAGAATTTCACAAGCAAAAGTAATCTCCAAACCCATATCGATGCGGAACACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatttaaatatcaaacTGAAATCCCTagacataaaaaattgtcgcACAATGGTATCATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCCCTCGCTCAATAAGTCCTAa
Protein Sequence: METSGLFNPAVRVKGEPCDVLLTQNNYETIDEIPVTENVKYERFLQENWTQEFQEKKLDDIQIELECTDMKPNLLAVAKIEDYSPSQWPDSDEYKTRSTIKLETVGSVKKEILREGENDLNLGRGLSKKNETGSVSKEINYDHWLKTHTERARNGNITPACDICGKVFKLRGNLNRHIDSVHRKIRHACDICQNTFSEKKSLRIHIDSVHYKIMHPCDVCQKTFSNSSNLRKHIESVHNSVRYECDICQKTFSDKGYLKTHIDSVHRKIRHACDICQKTFSDKNNLRNHINSMHYKIMHPCDVCQKTFSNRSYLRNHIHSVHNKVRYACDLCGNVYKRRNVLNIHINSVHHKIRHACDTCQNTFSTKKSLKKHIDSVHNRVRYACNICQKTFSEKGTLKTHVDSMHNGVSHACDICRNVFKRRGDLKTHVDSVHYKIMHPCDVCQKTFSNRSNLRKHIESVHNGVRYKCDVCGKNFTSKSNLQTHIDAEHNGITHACDFCEKKFKYQTEIPRHKKLSHNGIIHSCETCGKTFGQKRNLRAHIDMAHPSLNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484879;
90% Identity: iTF_01484879;
80% Identity: iTF_01484879;