Tpre003603.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:352421-354767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.9 63 3.8 0.7 8 23 151 167 150 167 0.86 2 16 3.8e-06 6.3e-05 22.7 1.6 3 23 174 195 172 196 0.95 3 16 7.6e-06 0.00012 21.8 0.9 1 23 200 223 200 223 0.93 4 16 1.1e-06 1.7e-05 24.5 0.5 3 23 230 251 229 251 0.95 5 16 4.7e-06 7.6e-05 22.4 0.1 1 23 256 279 256 279 0.96 6 16 4.6e-06 7.5e-05 22.5 1.2 1 23 284 307 284 307 0.95 7 16 1.1e-05 0.00018 21.3 1.1 1 23 312 335 312 335 0.94 8 16 0.00019 0.0031 17.4 0.9 1 23 340 363 340 363 0.94 9 16 3.5e-05 0.00058 19.7 1.2 1 23 368 391 368 391 0.95 10 16 1.9e-07 3.2e-06 26.8 1.5 1 23 396 419 396 419 0.95 11 16 2.6e-05 0.00042 20.1 0.6 1 23 424 447 424 447 0.93 12 16 2.1e-06 3.5e-05 23.5 1.0 1 23 452 475 452 475 0.96 13 16 0.00018 0.0029 17.5 0.2 1 23 480 503 480 503 0.96 14 16 0.0024 0.039 13.9 2.3 1 23 508 531 508 531 0.94 15 16 0.00011 0.0017 18.2 1.7 1 23 536 559 536 559 0.95 16 16 2.2e-06 3.6e-05 23.5 1.4 1 23 565 588 565 588 0.95
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGGTTCGTTCAATTGCgctgtcagAGTCAAAGAGGAATGTTATGATGAGTCTCGAGGTAAAAATGATTATGATATGATTGACGAAAACCCCGatataaaaaactttcaactCTTATCATTTCCGCAAGAAAATTTAaTCCATACCTTTCGAAAAAGTGACTTGAATCATCCACGTGAATTTAATAACGATGTTGAATTAGTCGTTGAATGTGAAGACGTCAAGCCCAACATTAATTTATTAGCAGttaagaaaattgaagaagatTCTCAAAATGGCTTGAAGGACATGGAGTACAATGATGTTTATACAACTCAAAACTTGATTAAAATGGAACCAACGGAGGAAGTACAACATGCATCTTTTGTGAACACCGCAGAAGAatcgaatttgaattcagACTGTAAACGtggcgagcaaaaaaaaacaagaaaaataacgaaagAGTTGAGCAacgaacataacctcaaaagaCACCGAGGTACGGTGCATAATGATACAAATTACGGATGTGAAACATGCGGAAAATATTTCTCAACTAACAGCAGTCTGAAAAGGCATATCCTATCAATACATCATGGTATTACCCActcatgtgataaatgcggaAAGTCTTTTACTCAAAAAGGTTATCTCAAAGGCCACATTGAGGCAGTCCACAAGGGCTTCACAAATGCCTGTGATATATGTGGAAGGACATTCTCAGACAAGAGTAAACTCCgaaaacacatcgattcgatgcataatggtgtcagaTATGCATGCGACATTTGCGGAAATGTGTTCAAACGAAAAGAGgatctcaaaacccacatcgagTCGGTGCATCAAAAAATCAGGCATccatgtgatatatgccaaaagacattctcacaaaaaggttatctcaaaactcacatcgattcggtgcacaacAAAATCAcgcatgcatgtgatatatgccaaGAGACATTCACACAGAAAACGaatctcaaaacccacatcgattcggtacatcgtaaaataaggcatgcatgcgatatatgccaaaagacacTCTCAGACAGGAATAGTCTCAGAAAgcacatcgattcagtgcataataaaatcacgcATCCATGCGATACATGTCGAAAGTCATTCACAACTAAAGTTAGTCTCAGaattcacatcgattcagtgcattataaaatcatgcatccatgtgatatatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGagtcggtgcataatggtgtcagtCACGCATGTAATATTTGCGGAAATGTTTTTAAACGAAGAGgcaatctcaaaactcacgtcGATTCGGTGCATCAAAAATTCACGCATccatgtgatatatgccaaGAGATATTCACACAGAAAACGAATCTCAAAAGACACATCAATTCGGTACATCGTAAAATCACTTAtccatgcgatatatgccagaaaatatttacacaaaaagatATTCTCAAAAGCCACATCGAGTctgtgcataatggtgtcagaCATGCATGCGACATTTGCGAGAATATCTATAAACATAGAAGCgatctcaataaacacatcgattcgaaGCATAATGGTGTTAGACATGCATGTGATGTATGCCAAAAGACGTTCGCACAAAAAATTAGTCTCAAAGTCCATATCcattcggtgcataataaaattattacgtaCACATGTGATATGTGCCAAAAGACGTTCTCATACAAAAGTGGtctaaaaaaacacatcgtttcgatgcataatggtgttggacatgcgtgtggtatatga
- Protein Sequence
- MESSGSFNCAVRVKEECYDESRGKNDYDMIDENPDIKNFQLLSFPQENLIHTFRKSDLNHPREFNNDVELVVECEDVKPNINLLAVKKIEEDSQNGLKDMEYNDVYTTQNLIKMEPTEEVQHASFVNTAEESNLNSDCKRGEQKKTRKITKELSNEHNLKRHRGTVHNDTNYGCETCGKYFSTNSSLKRHILSIHHGITHSCDKCGKSFTQKGYLKGHIEAVHKGFTNACDICGRTFSDKSKLRKHIDSMHNGVRYACDICGNVFKRKEDLKTHIESVHQKIRHPCDICQKTFSQKGYLKTHIDSVHNKITHACDICQETFTQKTNLKTHIDSVHRKIRHACDICQKTLSDRNSLRKHIDSVHNKITHPCDTCRKSFTTKVSLRIHIDSVHYKIMHPCDICQKTFSNRSNLRKHIESVHNGVSHACNICGNVFKRRGNLKTHVDSVHQKFTHPCDICQEIFTQKTNLKRHINSVHRKITYPCDICQKIFTQKDILKSHIESVHNGVRHACDICENIYKHRSDLNKHIDSKHNGVRHACDVCQKTFAQKISLKVHIHSVHNKIITYTCDMCQKTFSYKSGLKKHIVSMHNGVGHACGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484877;
- 90% Identity
- iTF_01484877;
- 80% Identity
- iTF_01484877;