Tden017915.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:434606-436677[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 5.1e+03 -1.5 0.1 38 51 130 143 127 144 0.84 2 12 0.3 6.6e+02 1.3 0.0 26 48 221 243 214 248 0.90 3 12 0.17 3.8e+02 2.1 0.0 27 48 250 271 245 275 0.89 4 12 0.34 7.7e+02 1.1 0.0 26 48 277 299 274 305 0.88 5 12 0.17 3.8e+02 2.1 0.0 27 48 306 327 301 332 0.89 6 12 0.048 1.1e+02 3.8 0.1 27 46 334 353 329 357 0.86 7 12 3.8 8.5e+03 -2.2 0.0 26 48 389 411 388 413 0.79 8 12 0.31 7e+02 1.2 0.1 27 46 418 437 414 441 0.75 9 12 0.037 82 4.2 0.0 26 48 473 495 471 499 0.90 10 12 0.018 41 5.2 0.0 26 48 501 523 497 530 0.89 11 12 0.033 73 4.4 0.0 25 48 556 579 545 582 0.87 12 12 0.048 1.1e+02 3.8 0.1 22 48 609 635 591 639 0.84
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATATTCAAATCTACCGttagAGTAAAAGACGAACCTCGTGATGAGCTTCTCAATGATAATgattacaaaataattgacACGATACTCCTTACTCAAAATATTAAACGCGAAAGGATTTGGCaagaaaattcagacCAAATGATTCAAGAATTTGTCGAAAATCACGACAATGAACTTGACGACGTACAAATCGAGTTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATTATTCTCCACATCAATGGGAGGATAGTGATGAGTATAAAACaggaagcaaaattaaattagaaacTGTCGGGACAGTGAAGAAAGAAATGTTAAGCGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGGAagcataatgaaaaaagaactGTTTCAAAAGAGGTGAACTATGAACATGGGctcaaaactcacattgaTACTACGCATAATGGAATcacacatgcatgtgatatttgcggaaaatcATTCGGATATAAGAGTCTTCTCCAAAGACACGTCGATTCGTTACATCGTAAAATCACGCATCCATGcgatatatgccaaaagacattcttAGACAAaagttacataaaaaaacacatcgcTTCAGTGCATAATGGTGGCTCAtatacatgtgatatttgcggaaagaacTTCACAACGAAAGGTAATCTTAAAAACCACATTGATTCTACGCATAATGGAATCACGCATccatgtgatatatgccaaaagacattctcagACAAGAGTAATGTTAGAAAGCACATCACTACGGTGCATATTGGTGTTAGACATGCATGTaatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCGTTACATCGTAAAATCACGCATccatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaaaacacatcgattcggtgcataattGTGTCACacatgaatgtgatatttgcggaaagacattCTCAGGCAAGAGTAATCTCAGAAGACACATCAGATCGGTGCACAAAACAGTCAATTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGGGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattcacacGAAAAAGtcatctcaaaactcacatcgattcggtgcataatggtgTCACATATGCGTGTAATGCATGCCCAAAGACATTCTCAGGCAAGAGTAATCTCAGAAGACACATCAGATCGGTGCACAAAACAGTCAATTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGGGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattcacacaaaaaagtaatctcaaaactcacatcgattcggtgcataatggtgTCACATATGcgtgtgatatttgcggaaatgTATTCAATCGTAAAGATGATCTCAAAAGACACATCGATTCAGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattctcagACAAGAGTAGTCTAAAAAGGCTTATCGATTCACAGCATAAAGATATCACCTATACGTGTAACATatgcgaaaagaaaattaaatttaaaagtaaactGAAAAAACATATTGATGCAATGCACAATGGAATCACCTACGTATGTAAtttctgtgaaaaaaaatttaaaaatcaaaattatctcAATAAGCATGTCAAAACGTCGCATAATGATATCACTCATGCATGCAAGACATGCGGAAAGACGTTTGCACAGAAAAGAAGTCTTAAAGCTCATATCGATATGGCCCATAACTCACACATTACGATTTGttaa
- Protein Sequence
- MESSDIFKSTVRVKDEPRDELLNDNDYKIIDTILLTQNIKRERIWQENSDQMIQEFVENHDNELDDVQIELECTDMKPNLLAVAKIEDYSPHQWEDSDEYKTGSKIKLETVGTVKKEMLSEEETDLNFGRGLRKHNEKRTVSKEVNYEHGLKTHIDTTHNGITHACDICGKSFGYKSLLQRHVDSLHRKITHPCDICQKTFLDKSYIKKHIASVHNGGSYTCDICGKNFTTKGNLKNHIDSTHNGITHPCDICQKTFSDKSNVRKHITTVHIGVRHACNICQKTFADKSNLKTHIDSLHRKITHPCDICQKTFSDKSNLKKHIDSVHNCVTHECDICGKTFSGKSNLRRHIRSVHKTVNYTCDSCGKTFTRKIYLQNHIDAGHNGIGYACDICQKTFTRKSHLKTHIDSVHNGVTYACNACPKTFSGKSNLRRHIRSVHKTVNYTCDSCGKTFTRKIYLQNHIDAGHNGIGYACDICQKTFTQKSNLKTHIDSVHNGVTYACDICGNVFNRKDDLKRHIDSVHHKIRHACDICQKTFSDKSSLKRLIDSQHKDITYTCNICEKKIKFKSKLKKHIDAMHNGITYVCNFCEKKFKNQNYLNKHVKTSHNDITHACKTCGKTFAQKRSLKAHIDMAHNSHITIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482788;
- 90% Identity
- iTF_01482788;
- 80% Identity
- iTF_01482788;