Tden017915.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:434606-436677[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.4e-06 0.00034 21.6 0.6 1 23 164 187 164 187 0.93 2 17 0.0022 0.08 14.2 0.9 1 23 192 215 192 215 0.95 3 17 1.2e-07 4.3e-06 27.6 0.7 1 23 220 243 220 243 0.96 4 17 1.4e-06 5.1e-05 24.3 1.6 1 23 248 271 248 271 0.96 5 17 1.5e-06 5.6e-05 24.1 1.3 1 23 276 299 276 299 0.94 6 17 2.2e-07 7.9e-06 26.8 1.4 1 23 304 327 304 327 0.95 7 17 1.6e-08 5.9e-07 30.3 1.3 1 23 332 355 332 355 0.97 8 17 5.5e-06 0.0002 22.4 0.4 1 23 360 383 360 383 0.93 9 17 5e-07 1.8e-05 25.7 2.1 1 23 388 411 388 411 0.95 10 17 5.6e-07 2e-05 25.5 0.4 1 23 416 439 416 439 0.97 11 17 5.5e-06 0.0002 22.4 0.4 1 23 444 467 444 467 0.93 12 17 2.3e-07 8.6e-06 26.7 0.7 1 23 472 495 472 495 0.95 13 17 3.6e-06 0.00013 23.0 0.5 1 23 500 523 500 524 0.95 14 17 0.00061 0.022 15.9 0.5 1 18 528 545 528 545 0.93 15 17 0.00047 0.017 16.3 1.3 1 23 556 579 556 579 0.93 16 17 1.4e-05 0.0005 21.1 3.3 1 23 584 607 584 607 0.98 17 17 3.9e-06 0.00014 22.8 1.0 1 23 612 635 612 635 0.94
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATATTCAAATCTACCGttagAGTAAAAGACGAACCTCGTGATGAGCTTCTCAATGATAATgattacaaaataattgacACGATACTCCTTACTCAAAATATTAAACGCGAAAGGATTTGGCaagaaaattcagacCAAATGATTCAAGAATTTGTCGAAAATCACGACAATGAACTTGACGACGTACAAATCGAGTTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATTATTCTCCACATCAATGGGAGGATAGTGATGAGTATAAAACaggaagcaaaattaaattagaaacTGTCGGGACAGTGAAGAAAGAAATGTTAAGCGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGGAagcataatgaaaaaagaactGTTTCAAAAGAGGTGAACTATGAACATGGGctcaaaactcacattgaTACTACGCATAATGGAATcacacatgcatgtgatatttgcggaaaatcATTCGGATATAAGAGTCTTCTCCAAAGACACGTCGATTCGTTACATCGTAAAATCACGCATCCATGcgatatatgccaaaagacattcttAGACAAaagttacataaaaaaacacatcgcTTCAGTGCATAATGGTGGCTCAtatacatgtgatatttgcggaaagaacTTCACAACGAAAGGTAATCTTAAAAACCACATTGATTCTACGCATAATGGAATCACGCATccatgtgatatatgccaaaagacattctcagACAAGAGTAATGTTAGAAAGCACATCACTACGGTGCATATTGGTGTTAGACATGCATGTaatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCGTTACATCGTAAAATCACGCATccatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaaaacacatcgattcggtgcataattGTGTCACacatgaatgtgatatttgcggaaagacattCTCAGGCAAGAGTAATCTCAGAAGACACATCAGATCGGTGCACAAAACAGTCAATTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGGGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattcacacGAAAAAGtcatctcaaaactcacatcgattcggtgcataatggtgTCACATATGCGTGTAATGCATGCCCAAAGACATTCTCAGGCAAGAGTAATCTCAGAAGACACATCAGATCGGTGCACAAAACAGTCAATTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGGGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattcacacaaaaaagtaatctcaaaactcacatcgattcggtgcataatggtgTCACATATGcgtgtgatatttgcggaaatgTATTCAATCGTAAAGATGATCTCAAAAGACACATCGATTCAGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattctcagACAAGAGTAGTCTAAAAAGGCTTATCGATTCACAGCATAAAGATATCACCTATACGTGTAACATatgcgaaaagaaaattaaatttaaaagtaaactGAAAAAACATATTGATGCAATGCACAATGGAATCACCTACGTATGTAAtttctgtgaaaaaaaatttaaaaatcaaaattatctcAATAAGCATGTCAAAACGTCGCATAATGATATCACTCATGCATGCAAGACATGCGGAAAGACGTTTGCACAGAAAAGAAGTCTTAAAGCTCATATCGATATGGCCCATAACTCACACATTACGATTTGttaa
- Protein Sequence
- MESSDIFKSTVRVKDEPRDELLNDNDYKIIDTILLTQNIKRERIWQENSDQMIQEFVENHDNELDDVQIELECTDMKPNLLAVAKIEDYSPHQWEDSDEYKTGSKIKLETVGTVKKEMLSEEETDLNFGRGLRKHNEKRTVSKEVNYEHGLKTHIDTTHNGITHACDICGKSFGYKSLLQRHVDSLHRKITHPCDICQKTFLDKSYIKKHIASVHNGGSYTCDICGKNFTTKGNLKNHIDSTHNGITHPCDICQKTFSDKSNVRKHITTVHIGVRHACNICQKTFADKSNLKTHIDSLHRKITHPCDICQKTFSDKSNLKKHIDSVHNCVTHECDICGKTFSGKSNLRRHIRSVHKTVNYTCDSCGKTFTRKIYLQNHIDAGHNGIGYACDICQKTFTRKSHLKTHIDSVHNGVTYACNACPKTFSGKSNLRRHIRSVHKTVNYTCDSCGKTFTRKIYLQNHIDAGHNGIGYACDICQKTFTQKSNLKTHIDSVHNGVTYACDICGNVFNRKDDLKRHIDSVHHKIRHACDICQKTFSDKSSLKRLIDSQHKDITYTCNICEKKIKFKSKLKKHIDAMHNGITYVCNFCEKKFKNQNYLNKHVKTSHNDITHACKTCGKTFAQKRSLKAHIDMAHNSHITIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483510; iTF_01482653;
- 90% Identity
- iTF_01483510; iTF_01482653;
- 80% Identity
- iTF_01483510; iTF_01482653;