Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000013.1:1244965-1246849[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.4 5.3e+03 -1.6 0.1 30 45 179 194 174 201 0.64

2 14 0.22 4.8e+02 1.7 0.0 26 49 204 227 197 232 0.84

3 14 0.049 1.1e+02 3.8 0.3 26 45 233 252 228 259 0.87

4 14 0.24 5.3e+02 1.6 0.0 26 49 262 285 255 290 0.84

5 14 0.061 1.4e+02 3.5 0.0 26 48 291 313 286 318 0.87

6 14 0.0057 13 6.8 0.0 23 48 317 342 312 348 0.85

7 14 1.1 2.5e+03 -0.5 0.0 23 48 346 371 342 376 0.84

8 14 0.047 1e+02 3.9 0.1 23 48 375 400 371 404 0.89

9 14 0.84 1.9e+03 -0.1 0.0 27 48 408 429 406 434 0.87

10 14 0.0061 14 6.7 0.0 23 48 433 458 428 463 0.87

11 14 0.0061 14 6.7 0.0 23 48 462 487 456 493 0.88

12 14 0.77 1.7e+03 -0.0 0.0 23 48 491 516 488 521 0.84

13 14 0.1 2.3e+02 2.8 0.1 23 45 549 571 540 577 0.87

14 14 3.4 7.6e+03 -2.1 0.0 27 34 582 589 580 600 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.4	5.3e+03	-1.6	0.1	30	45	179	194	174	201	0.64
2	14	0.22	4.8e+02	1.7	0.0	26	49	204	227	197	232	0.84
3	14	0.049	1.1e+02	3.8	0.3	26	45	233	252	228	259	0.87
4	14	0.24	5.3e+02	1.6	0.0	26	49	262	285	255	290	0.84
5	14	0.061	1.4e+02	3.5	0.0	26	48	291	313	286	318	0.87
6	14	0.0057	13	6.8	0.0	23	48	317	342	312	348	0.85
7	14	1.1	2.5e+03	-0.5	0.0	23	48	346	371	342	376	0.84
8	14	0.047	1e+02	3.9	0.1	23	48	375	400	371	404	0.89
9	14	0.84	1.9e+03	-0.1	0.0	27	48	408	429	406	434	0.87
10	14	0.0061	14	6.7	0.0	23	48	433	458	428	463	0.87
11	14	0.0061	14	6.7	0.0	23	48	462	487	456	493	0.88
12	14	0.77	1.7e+03	-0.0	0.0	23	48	491	516	488	521	0.84
13	14	0.1	2.3e+02	2.8	0.1	23	45	549	571	540	577	0.87
14	14	3.4	7.6e+03	-2.1	0.0	27	34	582	589	580	600	0.70

Sequence Information

Coding Sequence: ATGAAATCAAGGTGCAGTGTTGGCTACTCGAAGTGTATAACCTCAATTTTCGATTCGGTAAACTCTtgcgaaacaaaaaacaataaagtatTGCCGTTTTCTGGATTATCAGCAAATCACACGAATGAGGTTATGGCGTTACAAGAAaagttagatgaaaaaatagacATCGATTTTGAGTGCAAATATGTTATACCCAAACTAGAATCTATATCAACAGTCGTCTGCAAATCTGAATATAAAAGTTGCCTACCTATTgtgaaagtagaaaaagaaTTTCAGGCTAATCATTTAAATCATAAAGatcttataattttgataaaaaaagagttcGATTATGATAATAAGTGTAAATTTCACATAAACTCCCAActgcaaattgaaaaatataatgaggTTGGAATATTTAGAAAAACTACTTCAAACAGATTATTTTATGAGTGCAAAATGGGTCGAAAAATGTGTAAAGAAAAAGCGAGTTTGAACACAAATATCGACTCAGTCCGTAAGGACGTTAGCTTTGAATGTGGCGTTTCTCACAAATCATTTCGTCGCAAACTGGATCTTAAAAGACATATAATTGTAGTTCACAATCGTAGCAAATctttcgaatgtgaaatttgtcacaaattatttggataTAAAGGTAACCTCAAGCAACACATAAGTACAGTTCATGATGGGAAAAAATGCTtcgagtgtgacatttgtcacaaatcatttcgTCGCAAACTGGATCTTAAAAGACATATAATTGCAGTTCACAATCGTAGCAAATctttcgaatgtgaaatttgtcacgaATTATTTGGATATAAAGGTAACCTCAAGCAACACATAAGTACAGTTCATGATGGGAAAAAATGCTtcgagtgtgacatttgtcacaaatcatttggacaaaaaagtaatctcaaaattcacataaatacagtacatgatcgtagcaaaccctttgaatgtgagatttgtcacaaatcatttggacaaaaaagtaatctcaaaactcacataaatacattacatgatcgtagcaaaccctttgaatgtgaaatttgtcagaAATCATTTGGAGCAAAGGGTGACCTCAGTAAGCACATAAATATAGTACACAAACGAATAAAACCGTTCGAGTGTggcatttgtcacaaattatttggacaCAAAAATAGCCTCAAACGTCACGTCAATGCAGTACATAAGCTCACCAAactctttgaatgtgatatttgtcacggATCATTTTCAGACAAGACTGTCCTCAAAAGGCACACAATGACGAAACATAATGAGATTAAACCTTTTgagtgtgaaatttgtcaaaaattatttagataCAGCAGTGACCTCAAGAAACACACCaatgcagtacatgaaggtAGCAAACCgtttgaatgtgacatttgtcagaaattattttcagacaAGAGTAACCTCAATAGacatataaatacagtacataatcgaattaaacccttcgaatgtgacatttgtcacggATCATTTGGATATAAAGGTCACCTCAATAAACACGTGAATATAGTACATAATCAGAGCAAACCATTCGAGTGTGGCATTCGTCACACatcatttggacgaaaagaaCATCTTAAAACTCATATTAGAACAATACACAATCGtatcaaaccctttgaatgtgagatttgccaCAATACATTTTCAGTCAAGGGAAACCTCAACAAACACCTAattgcagtacatgatcgtaacAAACTTTTCGAATGTGGcatttgttacaaatcatttggatacaagcAACTTctaaaaattcacataaatgcagtaaaTCATTGa
Protein Sequence: MKSRCSVGYSKCITSIFDSVNSCETKNNKVLPFSGLSANHTNEVMALQEKLDEKIDIDFECKYVIPKLESISTVVCKSEYKSCLPIVKVEKEFQANHLNHKDLIILIKKEFDYDNKCKFHINSQLQIEKYNEVGIFRKTTSNRLFYECKMGRKMCKEKASLNTNIDSVRKDVSFECGVSHKSFRRKLDLKRHIIVVHNRSKSFECEICHKLFGYKGNLKQHISTVHDGKKCFECDICHKSFRRKLDLKRHIIAVHNRSKSFECEICHELFGYKGNLKQHISTVHDGKKCFECDICHKSFGQKSNLKIHINTVHDRSKPFECEICHKSFGQKSNLKTHINTLHDRSKPFECEICQKSFGAKGDLSKHINIVHKRIKPFECGICHKLFGHKNSLKRHVNAVHKLTKLFECDICHGSFSDKTVLKRHTMTKHNEIKPFECEICQKLFRYSSDLKKHTNAVHEGSKPFECDICQKLFSDKSNLNRHINTVHNRIKPFECDICHGSFGYKGHLNKHVNIVHNQSKPFECGIRHTSFGRKEHLKTHIRTIHNRIKPFECEICHNTFSVKGNLNKHLIAVHDRNKLFECGICYKSFGYKQLLKIHINAVNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482825;
90% Identity: iTF_01482825;
80% Identity: iTF_01482825;