Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000013.1:1244965-1246849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.026 0.94 10.8 0.4 7 23 180 197 174 197 0.86

2 15 3.4e-05 0.0012 19.9 1.2 1 23 203 226 203 226 0.97

3 15 1.7e-06 6.1e-05 24.0 1.2 1 23 232 255 232 255 0.94

4 15 0.00013 0.0046 18.1 0.7 1 23 261 284 261 284 0.97

5 15 1.3e-07 4.6e-06 27.5 1.4 1 23 290 313 290 313 0.98

6 15 1.6e-07 6e-06 27.2 2.2 1 23 319 342 319 342 0.98

7 15 5.2e-05 0.0019 19.3 0.1 1 23 348 371 348 371 0.97

8 15 0.00065 0.024 15.8 2.3 1 23 377 400 377 400 0.94

9 15 0.00024 0.0086 17.2 2.3 1 23 406 429 406 429 0.98

10 15 2.5e-05 0.00093 20.3 0.8 1 23 435 458 435 458 0.95

11 15 1.3e-07 4.9e-06 27.5 0.6 1 23 464 487 464 487 0.98

12 15 0.00033 0.012 16.8 1.4 1 23 493 516 493 516 0.97

13 15 0.026 0.96 10.8 1.7 7 23 528 545 522 545 0.86

14 15 4.6e-05 0.0017 19.5 0.5 1 23 551 574 551 574 0.93

15 15 0.00079 0.029 15.6 0.2 1 21 580 600 580 604 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.026	0.94	10.8	0.4	7	23	180	197	174	197	0.86
2	15	3.4e-05	0.0012	19.9	1.2	1	23	203	226	203	226	0.97
3	15	1.7e-06	6.1e-05	24.0	1.2	1	23	232	255	232	255	0.94
4	15	0.00013	0.0046	18.1	0.7	1	23	261	284	261	284	0.97
5	15	1.3e-07	4.6e-06	27.5	1.4	1	23	290	313	290	313	0.98
6	15	1.6e-07	6e-06	27.2	2.2	1	23	319	342	319	342	0.98
7	15	5.2e-05	0.0019	19.3	0.1	1	23	348	371	348	371	0.97
8	15	0.00065	0.024	15.8	2.3	1	23	377	400	377	400	0.94
9	15	0.00024	0.0086	17.2	2.3	1	23	406	429	406	429	0.98
10	15	2.5e-05	0.00093	20.3	0.8	1	23	435	458	435	458	0.95
11	15	1.3e-07	4.9e-06	27.5	0.6	1	23	464	487	464	487	0.98
12	15	0.00033	0.012	16.8	1.4	1	23	493	516	493	516	0.97
13	15	0.026	0.96	10.8	1.7	7	23	528	545	522	545	0.86
14	15	4.6e-05	0.0017	19.5	0.5	1	23	551	574	551	574	0.93
15	15	0.00079	0.029	15.6	0.2	1	21	580	600	580	604	0.92

Sequence Information

Coding Sequence: ATGAAATCAAGGTGCAGTGTTGGCTACTCGAAGTGTATAACCTCAATTTTCGATTCGGTAAACTCTtgcgaaacaaaaaacaataaagtatTGCCGTTTTCTGGATTATCAGCAAATCACACGAATGAGGTTATGGCGTTACAAGAAaagttagatgaaaaaatagacATCGATTTTGAGTGCAAATATGTTATACCCAAACTAGAATCTATATCAACAGTCGTCTGCAAATCTGAATATAAAAGTTGCCTACCTATTgtgaaagtagaaaaagaaTTTCAGGCTAATCATTTAAATCATAAAGatcttataattttgataaaaaaagagttcGATTATGATAATAAGTGTAAATTTCACATAAACTCCCAActgcaaattgaaaaatataatgaggTTGGAATATTTAGAAAAACTACTTCAAACAGATTATTTTATGAGTGCAAAATGGGTCGAAAAATGTGTAAAGAAAAAGCGAGTTTGAACACAAATATCGACTCAGTCCGTAAGGACGTTAGCTTTGAATGTGGCGTTTCTCACAAATCATTTCGTCGCAAACTGGATCTTAAAAGACATATAATTGTAGTTCACAATCGTAGCAAATctttcgaatgtgaaatttgtcacaaattatttggataTAAAGGTAACCTCAAGCAACACATAAGTACAGTTCATGATGGGAAAAAATGCTtcgagtgtgacatttgtcacaaatcatttcgTCGCAAACTGGATCTTAAAAGACATATAATTGCAGTTCACAATCGTAGCAAATctttcgaatgtgaaatttgtcacgaATTATTTGGATATAAAGGTAACCTCAAGCAACACATAAGTACAGTTCATGATGGGAAAAAATGCTtcgagtgtgacatttgtcacaaatcatttggacaaaaaagtaatctcaaaattcacataaatacagtacatgatcgtagcaaaccctttgaatgtgagatttgtcacaaatcatttggacaaaaaagtaatctcaaaactcacataaatacattacatgatcgtagcaaaccctttgaatgtgaaatttgtcagaAATCATTTGGAGCAAAGGGTGACCTCAGTAAGCACATAAATATAGTACACAAACGAATAAAACCGTTCGAGTGTggcatttgtcacaaattatttggacaCAAAAATAGCCTCAAACGTCACGTCAATGCAGTACATAAGCTCACCAAactctttgaatgtgatatttgtcacggATCATTTTCAGACAAGACTGTCCTCAAAAGGCACACAATGACGAAACATAATGAGATTAAACCTTTTgagtgtgaaatttgtcaaaaattatttagataCAGCAGTGACCTCAAGAAACACACCaatgcagtacatgaaggtAGCAAACCgtttgaatgtgacatttgtcagaaattattttcagacaAGAGTAACCTCAATAGacatataaatacagtacataatcgaattaaacccttcgaatgtgacatttgtcacggATCATTTGGATATAAAGGTCACCTCAATAAACACGTGAATATAGTACATAATCAGAGCAAACCATTCGAGTGTGGCATTCGTCACACatcatttggacgaaaagaaCATCTTAAAACTCATATTAGAACAATACACAATCGtatcaaaccctttgaatgtgagatttgccaCAATACATTTTCAGTCAAGGGAAACCTCAACAAACACCTAattgcagtacatgatcgtaacAAACTTTTCGAATGTGGcatttgttacaaatcatttggatacaagcAACTTctaaaaattcacataaatgcagtaaaTCATTGa
Protein Sequence: MKSRCSVGYSKCITSIFDSVNSCETKNNKVLPFSGLSANHTNEVMALQEKLDEKIDIDFECKYVIPKLESISTVVCKSEYKSCLPIVKVEKEFQANHLNHKDLIILIKKEFDYDNKCKFHINSQLQIEKYNEVGIFRKTTSNRLFYECKMGRKMCKEKASLNTNIDSVRKDVSFECGVSHKSFRRKLDLKRHIIVVHNRSKSFECEICHKLFGYKGNLKQHISTVHDGKKCFECDICHKSFRRKLDLKRHIIAVHNRSKSFECEICHELFGYKGNLKQHISTVHDGKKCFECDICHKSFGQKSNLKIHINTVHDRSKPFECEICHKSFGQKSNLKTHINTLHDRSKPFECEICQKSFGAKGDLSKHINIVHKRIKPFECGICHKLFGHKNSLKRHVNAVHKLTKLFECDICHGSFSDKTVLKRHTMTKHNEIKPFECEICQKLFRYSSDLKKHTNAVHEGSKPFECDICQKLFSDKSNLNRHINTVHNRIKPFECDICHGSFGYKGHLNKHVNIVHNQSKPFECGIRHTSFGRKEHLKTHIRTIHNRIKPFECEICHNTFSVKGNLNKHLIAVHDRNKLFECGICYKSFGYKQLLKIHINAVNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01483508;
90% Identity: iTF_01483508;
80% Identity: iTF_01483508;