Tden017871.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:11281-13093[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0042 9.4 7.2 0.0 20 48 164 192 161 196 0.88 2 10 0.024 53 4.8 0.0 26 48 198 220 194 226 0.89 3 10 0.012 28 5.7 0.2 27 48 227 248 222 252 0.88 4 10 0.063 1.4e+02 3.5 0.0 26 48 282 304 280 307 0.88 5 10 3.3 7.3e+03 -2.0 0.0 26 48 310 332 308 337 0.83 6 10 0.24 5.4e+02 1.6 0.0 26 48 338 360 334 363 0.90 7 10 0.84 1.9e+03 -0.1 0.1 26 48 366 388 360 393 0.86 8 10 0.27 6.1e+02 1.4 0.0 26 48 394 416 391 419 0.90 9 10 0.48 1.1e+03 0.6 0.1 26 50 422 446 419 448 0.88 10 10 0.025 55 4.8 0.1 26 48 534 556 512 556 0.86
Sequence Information
- Coding Sequence
- ATGAGATTTCCAACAAGTAAGATGGAATCTGGTGATTTATTCAATCCTGCTGtgagAGTGAAAGAAGAGCATCGTGATGAGCCGCTCAATGCTAatgattatgaaataattgacTTGACACTTACAGTTACTCAAAATGTTAAATGCGAAAGGTCTTGGCATGAAAATTCAgaccACATGCTGCAAGAATATGACAAAAGTCACGAAAATGGACATGACGACATCCAAATCGAATTGGAATGTACAGATATGAAGCCCAATTTATTGGCGAAAATTGAAGATTTCTCTCCAAATCACGGGCAGCATAGCGATGATTATGAAACaggaagcaaaattaaattagaaacTGTCGGGACAGtgaagaaagaaatttttagcGAAGAAGAAACTGATTTGAATTTCGGACGTGGactgaacgaaaaaaatgagaaagaatGTGTTGAAAAGTCGAACTATAAGAAGAGTCTCAAAGCACACGTGGGTATGGTGCAAAGCGGTATCAACAATACATGCGATATATGCCAAAATACGTTCTCAAACAAGAAgaatctcaaaactcacatccATTCGGTACATAATGGTGCCAGTCATGCATGCGATATTTGcagaaatgtttttaaacgAAAAGGTGATCTCAAAAagcacatcgattcggtgcatcaTAAAATAAGGCATCCATGTGATATATGTCAAAAGACATTCTCAGGCAAGAATAATCTCAGAAGACACATCAGATCGGTGCACAAAGCAGTCAATTATAAGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGTGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattctcagACAAGAGTAATCTTAGAAAGCACAccgattcggtgcataatggtgTCAGTTATACATGCGATTTTTGCGGAAATGATTTTAAACGAAGAGGCGATCTCAAAAAACACGTCGATTCGGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaactcacatcgatTCAATGCATAATGGTGCCAGTTATGCATGCGATATTTgcgaaaatgattttaaacgaAGAGCCGATCTCAAAAAACACGTCGATTCGGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCAATGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagGCAAGAGAAGTATAAAACAACACATCAATTCGATGCATAAAGCAGTCAAGTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTCTCTCCAATACCATATCAACGTAGTGCACAATGGATTCGGCTATGTATGTGATAAGTGCGGAACGAAATACACAACGAGAGGTAATCTTAAAACCCACATCGATGCAATACATAATGGTATCAATTATGCATGTggtttttgtgaaaaaaaatataaatatcaaactCAACTCAATAAGCATGTCAAATCATCGCATAATAGTATCATCCATTCATGCGAGACATGTGGAAAGGCATTCGGACAGAGAAGAAATCTTAAAACTCATATCGATGTGGCTCATTGA
- Protein Sequence
- MRFPTSKMESGDLFNPAVRVKEEHRDEPLNANDYEIIDLTLTVTQNVKCERSWHENSDHMLQEYDKSHENGHDDIQIELECTDMKPNLLAKIEDFSPNHGQHSDDYETGSKIKLETVGTVKKEIFSEEETDLNFGRGLNEKNEKECVEKSNYKKSLKAHVGMVQSGINNTCDICQNTFSNKKNLKTHIHSVHNGASHACDICRNVFKRKGDLKKHIDSVHHKIRHPCDICQKTFSGKNNLRRHIRSVHKAVNYKCDSCGKTFTRKIYLQNHIDAVHNGIGYACDICQKTFSDKSNLRKHTDSVHNGVSYTCDFCGNDFKRRGDLKKHVDSVHHKIRHACDICQKTFSDKSNLKTHIDSMHNGASYACDICENDFKRRADLKKHVDSVHHKIRHACDICQKTFADKSNLKTHIDSMHNGVRHACNICQKTFSGKRSIKQHINSMHKAVKYTCDSCGKTFTRKISLQYHINVVHNGFGYVCDKCGTKYTTRGNLKTHIDAIHNGINYACGFCEKKYKYQTQLNKHVKSSHNSIIHSCETCGKAFGQRRNLKTHIDVAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482824;
- 90% Identity
- iTF_01482824;
- 80% Identity
- iTF_01482824;