Tden017871.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:11281-13093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00016 0.0059 17.8 3.1 2 23 170 192 170 192 0.96 2 14 0.00025 0.009 17.2 2.3 1 23 197 220 197 221 0.94 3 14 6.1e-07 2.2e-05 25.4 1.6 1 23 225 248 225 248 0.96 4 14 3.1e-06 0.00011 23.2 0.6 1 23 253 276 253 276 0.93 5 14 3.1e-07 1.2e-05 26.3 0.8 1 23 281 304 281 304 0.94 6 14 0.0002 0.0074 17.5 1.7 1 23 309 332 309 333 0.95 7 14 8.6e-07 3.2e-05 24.9 1.6 1 23 337 360 337 360 0.94 8 14 0.00069 0.025 15.8 0.6 1 23 365 388 365 389 0.94 9 14 1.7e-06 6.2e-05 24.0 1.0 1 23 393 416 393 416 0.94 10 14 0.00041 0.015 16.5 2.0 1 23 421 444 421 444 0.95 11 14 1.8e-06 6.5e-05 23.9 0.7 1 23 449 472 449 472 0.97 12 14 1.1e-05 0.0004 21.4 0.3 1 23 477 500 477 500 0.93 13 14 0.00043 0.016 16.4 2.1 1 23 505 528 505 528 0.96 14 14 1.4e-05 0.00051 21.1 0.7 1 23 533 556 533 556 0.95
Sequence Information
- Coding Sequence
- ATGAGATTTCCAACAAGTAAGATGGAATCTGGTGATTTATTCAATCCTGCTGtgagAGTGAAAGAAGAGCATCGTGATGAGCCGCTCAATGCTAatgattatgaaataattgacTTGACACTTACAGTTACTCAAAATGTTAAATGCGAAAGGTCTTGGCATGAAAATTCAgaccACATGCTGCAAGAATATGACAAAAGTCACGAAAATGGACATGACGACATCCAAATCGAATTGGAATGTACAGATATGAAGCCCAATTTATTGGCGAAAATTGAAGATTTCTCTCCAAATCACGGGCAGCATAGCGATGATTATGAAACaggaagcaaaattaaattagaaacTGTCGGGACAGtgaagaaagaaatttttagcGAAGAAGAAACTGATTTGAATTTCGGACGTGGactgaacgaaaaaaatgagaaagaatGTGTTGAAAAGTCGAACTATAAGAAGAGTCTCAAAGCACACGTGGGTATGGTGCAAAGCGGTATCAACAATACATGCGATATATGCCAAAATACGTTCTCAAACAAGAAgaatctcaaaactcacatccATTCGGTACATAATGGTGCCAGTCATGCATGCGATATTTGcagaaatgtttttaaacgAAAAGGTGATCTCAAAAagcacatcgattcggtgcatcaTAAAATAAGGCATCCATGTGATATATGTCAAAAGACATTCTCAGGCAAGAATAATCTCAGAAGACACATCAGATCGGTGCACAAAGCAGTCAATTATAAGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTATCTCCAAAACCATATCGACGCAGTGCACAATGGAATCGGctatgcatgtgatatatgccaaaagacattctcagACAAGAGTAATCTTAGAAAGCACAccgattcggtgcataatggtgTCAGTTATACATGCGATTTTTGCGGAAATGATTTTAAACGAAGAGGCGATCTCAAAAAACACGTCGATTCGGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattctcagacaagagtaatctcaaaactcacatcgatTCAATGCATAATGGTGCCAGTTATGCATGCGATATTTgcgaaaatgattttaaacgaAGAGCCGATCTCAAAAAACACGTCGATTCGGTGCATCATAAAATAAggcatgcatgtgatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCAATGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagGCAAGAGAAGTATAAAACAACACATCAATTCGATGCATAAAGCAGTCAAGTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGATTTCTCTCCAATACCATATCAACGTAGTGCACAATGGATTCGGCTATGTATGTGATAAGTGCGGAACGAAATACACAACGAGAGGTAATCTTAAAACCCACATCGATGCAATACATAATGGTATCAATTATGCATGTggtttttgtgaaaaaaaatataaatatcaaactCAACTCAATAAGCATGTCAAATCATCGCATAATAGTATCATCCATTCATGCGAGACATGTGGAAAGGCATTCGGACAGAGAAGAAATCTTAAAACTCATATCGATGTGGCTCATTGA
- Protein Sequence
- MRFPTSKMESGDLFNPAVRVKEEHRDEPLNANDYEIIDLTLTVTQNVKCERSWHENSDHMLQEYDKSHENGHDDIQIELECTDMKPNLLAKIEDFSPNHGQHSDDYETGSKIKLETVGTVKKEIFSEEETDLNFGRGLNEKNEKECVEKSNYKKSLKAHVGMVQSGINNTCDICQNTFSNKKNLKTHIHSVHNGASHACDICRNVFKRKGDLKKHIDSVHHKIRHPCDICQKTFSGKNNLRRHIRSVHKAVNYKCDSCGKTFTRKIYLQNHIDAVHNGIGYACDICQKTFSDKSNLRKHTDSVHNGVSYTCDFCGNDFKRRGDLKKHVDSVHHKIRHACDICQKTFSDKSNLKTHIDSMHNGASYACDICENDFKRRADLKKHVDSVHHKIRHACDICQKTFADKSNLKTHIDSMHNGVRHACNICQKTFSGKRSIKQHINSMHKAVKYTCDSCGKTFTRKISLQYHINVVHNGFGYVCDKCGTKYTTRGNLKTHIDAIHNGINYACGFCEKKYKYQTQLNKHVKSSHNSIIHSCETCGKAFGQRRNLKTHIDVAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483505; iTF_01482656;
- 90% Identity
- iTF_01483505; iTF_01482656;
- 80% Identity
- iTF_01483505; iTF_01482656;