Tden017870.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:8199-10172[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.52 1.2e+03 0.5 0.1 26 48 187 209 178 215 0.84 2 12 0.023 52 4.9 0.0 26 49 215 238 211 243 0.91 3 12 0.016 35 5.4 0.2 27 48 247 268 241 270 0.87 4 12 4.3 9.7e+03 -2.4 0.0 26 48 274 296 273 302 0.82 5 12 0.0049 11 7.0 0.0 26 48 302 324 294 330 0.92 6 12 0.19 4.2e+02 1.9 0.0 26 48 330 352 327 355 0.92 7 12 0.62 1.4e+03 0.3 0.0 26 48 358 380 354 385 0.91 8 12 0.18 4e+02 2.0 0.0 26 48 386 408 382 413 0.89 9 12 4.9 1.1e+04 -2.6 0.0 26 48 414 436 408 439 0.79 10 12 0.022 50 4.9 0.0 26 48 442 464 439 468 0.93 11 12 0.68 1.5e+03 0.2 0.0 26 49 470 493 465 496 0.87 12 12 0.0012 2.8 8.9 0.1 18 48 574 604 559 606 0.82
Sequence Information
- Coding Sequence
- ATGAGATTTCCAACCAGTAAGATGGAATCTGGTGATTTATTCAATCCTGCTGtgagAGTGAAAGAAGAACCTCGTGATGAGCCGCTCAATGCTAatgattatgaaataattgacTTGACACTTGCagtaaatcaaaatattaaatacgaAAAGTTTTGGCaagaaaattcaacccaAGAGCTTTTTCAAGAATATGACGAAAATCAGGAAAATGAACTTGACGACATCCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATTTCTCTCCAAATCAATGGCCGGATAGCGATGTTCATAAAAACGGAAGTAATATTAAACTAGAAACTGTCGGAACAGTGAAGGAAGAAATTTTCAGTGAAGAAGCCACTGTGATGAATGTTGAACgcgtttcaaaaaatatgaactgTAAACATAGGCTCGAAACTCAAATTGACACTGCGCATAATGGAATCAGACGTGCATGTGACACTTCTGGAAAATCATTCAGGCGACAGACTCATATGAAAGTCCACAAGGATGTCACTCACGCATGTGAAATATGCGGCAATGTATACAAACGaagaaattttctcaaaattcacatcgaCTCGGCGCATAATAGTGTCAGACATGTCTGCGACAtttgtggaaagacattcacacaaaaaatGAGTCTCAAACgtcacatcgattcggtgcattATAAAGTGGCAAATATTACACATCCATGTaatatatgccaaaagacGTTTTCAGTCAAGAGTAATCTCAGAAGACACATCGATTCGTTGCATAAAGGTATCAATTATACGTGTGATTCATGTGGTAACACGTTTACAACAAAGTATAATCTGCAAAACCATATCGACTCGGTGCATAATAGTGTCAGACATGTCTGCGACATTTGTGGAAAAacattcacacaaaaaatGGGTCTCAAACGTCACATCGATTTAGAGCATAATGGTGTTAGACATGTATGTaatatatgccaaaagacattctcagACAAGAGTTAcctaaaaaaacacatcgatttAATGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagACAAGAGTTAcctaaaaaaacacatcgattcgaAGCATAATGGTGTCGGTCATGCATGTaatatatgccaaaagacattctcagACAAGAGGAGTCTAAAAAATCACATCGATTCTGTGCATAACAGTGTCagacatgcatgtgatatttgccaaaagacattcttAGGCAAGAGTTAcctaaaaaaacacatcgattcgatGCATAATGGTGTCGGTCATGCATGTaatatatgccaaaagacattcgcagacaagagtaatctcaaaactcacatcgatTCAAGGCATAATGGTGTTAGACATGCATGTaatatatgccaaaagacattctcagACAAGAGAAGTATAAAACAACACACCAATTCGATGCATAAAGCAGTCAAGTATACGTGTGATTCATGTGGTAAGACGTTTACACGAAAGACTTCTCTCCAATACCATATCAACGTAGTGCACAATGGATTCGGCTATGTATGTGATAAGTGCGGAACGAAATACACAACGAAAGGTAATCTTAAAACCCACATCGATGCGATACATAATGGTATCAATTATGCATgtgatttttgtgaaaaaaaatataaatatcaaactCAACTCAATAAGCATGTCAAATCGTCGCATAGTGGTATCATCCATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCGCACTCTCATTATGAcctaa
- Protein Sequence
- MRFPTSKMESGDLFNPAVRVKEEPRDEPLNANDYEIIDLTLAVNQNIKYEKFWQENSTQELFQEYDENQENELDDIQIELECTDMKPNLLAVAKIEDFSPNQWPDSDVHKNGSNIKLETVGTVKEEIFSEEATVMNVERVSKNMNCKHRLETQIDTAHNGIRRACDTSGKSFRRQTHMKVHKDVTHACEICGNVYKRRNFLKIHIDSAHNSVRHVCDICGKTFTQKMSLKRHIDSVHYKVANITHPCNICQKTFSVKSNLRRHIDSLHKGINYTCDSCGNTFTTKYNLQNHIDSVHNSVRHVCDICGKTFTQKMGLKRHIDLEHNGVRHVCNICQKTFSDKSYLKKHIDLMHNGVRHACNICQKTFSDKSYLKKHIDSKHNGVGHACNICQKTFSDKRSLKNHIDSVHNSVRHACDICQKTFLGKSYLKKHIDSMHNGVGHACNICQKTFADKSNLKTHIDSRHNGVRHACNICQKTFSDKRSIKQHTNSMHKAVKYTCDSCGKTFTRKTSLQYHINVVHNGFGYVCDKCGTKYTTKGNLKTHIDAIHNGINYACDFCEKKYKYQTQLNKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDMAHRTLIMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482665;
- 90% Identity
- iTF_01482665;
- 80% Identity
- iTF_01482665;