Tmad006944.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- bab1
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000020.1:8701656-8705528[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-16 3.4e-13 49.0 0.1 1 45 358 402 358 402 0.97 2 2 0.23 1.9e+02 1.9 0.2 6 18 473 486 471 488 0.81
Sequence Information
- Coding Sequence
- ATGTGTGCAGCTCAACAGTACTGCCTTAGGTGGAACAACCACCGGTCAAACCTACTCACAGTCTTTGATGAACTCCTACAAAATGAAGCCTTCACCGATGTTACCCTCGCTTGCGATGGTGGCAGTCCAATAAAATGCCACCGGATGGTTCTAGCCGCCTGTTCCCCTTATTTCCAAAACTTGTTCACGGATCTACCATGCAAGCACCCAGTGGTGGTCCTCAAAGACGTCAAGTATTCGGAAATCAAAGCTATATTAGAGTACATGTATCGAGGCGAGGTCAACGTAGCCCAGGACCAACTCGCCGCCTTGCTCAAAGTGGCCGAAGCCCTCAAAGTGAAGGGCTTGGTCGAAGAAAACCGCTCCAGTGGGAGCTTCTCCTGCAACCGCGATGAGGAGCCCATGGAACACTCCCCCACGGGCACCAGCAACTCCAATTCAAGCATTCAGAACGTGCACAGTAGCAGCAATAACTCGCCCCCGCATTCGACCAACAGCCACTACAAGAATCCTTACGGCATGTACAAGTCGGGGAGCATGGATCGCAATCCCAGGATGAATCTGCCCATTTGGGCAGTGCCGGGATTGCCCATGCCCTCGCATTCAAATACCGTTCCTAACCAAAACCACCCACATGCTGCCGCCACCGCTGCGGCTGCTATGTTGAGTAGTTGTTACGAAGCTGCCACCGACATGTCGCCTCTGAAAAGGAAAAAATTGTCCAGTCTTCTCATGAATAGAGACACTCCGATTTTGAGGACTGTTCTAGGACAAGGTCAGGCTGATTCATCGCAACCTGTAAGCCTGGTCTGTCATCCGGACAGCCACGATCAACATTCGAACGGACCGGACCAAGAGCGAATGGAAAAGCACTTGAAAAACGAACCCTCCGAGGACGCTCAATCCCCTTACACGGACTTCACGATGATGAATGACGACGAAGAAAAATCAAAATTAGCGATTCCGTCCTCCTCTCCCCAATCCTACTCCAGCGAAATGCGAGCCGTGTCTTCAGGCATTGCAACCTACGTGCCGAACCAAAAACCCGAATGGAAACGCTACAAGCAATACACCCGAGAAGACATCTTATCTGCCATCGAAGCCGTGCGAAACGGGATGTCTGCGTTGCAAGCCGCCCGGAAGTACGGCGTGCCTTCGCGAACTCTTTACGACAAGGTAAAGAAACTTGGTATAACGACAAGTCGGCCTTTTAAACGGGGCACTAACGGGAGTCCTGCGTGCTTTCCTTATGGGATAAGCGGGACAGGGTCGCCGTACGGGGGCCACATGCCTGAGATGGACGATCCTCCTGCCAATAGTAACAACACTTCGAGTCTCCTGGAGGCGACGTTCCTCCAGCACGCGTTTGAGGGTCGTGGTGGTGACGATAGGGAGGCGTTGGCGGCGATGGCAGTGGCGGCGGCGGCGCATGCCGTGGTTTCGGGGCATTCGACAAGTCCTTCGAACCACGGACATGCCACGAGTCCGAGCCCGAGTCCCACTTTGTTGAAGTATATGAGACAGAATAGCATGACGCCGTCGCCGGCCCCCGGAAGCGAGCACCACCACAGTGAGACTAACGGGAGTTCGGAGCGAGAGCGCGATGATGATGACGACCAGGTGGAGGATTTGTCAGTTGGGAGGAAGCAAGAGTCGCGAGTGATAATGCCTCCGATGAATCAGGTGTCGACGATAATGAAGAAGGAGGAGTTGTTGAAGGACATGATCAAGGAGGAGGCTCGGAGGGAGATAAGCGTGGAGGAGGCGGAATAG
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACDGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSSGSFSCNRDEEPMEHSPTGTSNSNSSIQNVHSSSNNSPPHSTNSHYKNPYGMYKSGSMDRNPRMNLPIWAVPGLPMPSHSNTVPNQNHPHAAATAAAAMLSSCYEAATDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHDQHSNGPDQERMEKHLKNEPSEDAQSPYTDFTMMNDDEEKSKLAIPSSSPQSYSSEMRAVSSGIATYVPNQKPEWKRYKQYTREDILSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSPACFPYGISGTGSPYGGHMPEMDDPPANSNNTSSLLEATFLQHAFEGRGGDDREALAAMAVAAAAHAVVSGHSTSPSNHGHATSPSPSPTLLKYMRQNSMTPSPAPGSEHHHSETNGSSERERDDDDDQVEDLSVGRKQESRVIMPPMNQVSTIMKKEELLKDMIKEEARREISVEEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01409879;
- 80% Identity
- iTF_01481015;